Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-021-00951-6

https://doi.org/10.1186/s13073-021-00951-6

Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus

Cited by: 10
Author(s): Nandan P. Deshpande, Stephen M. Riordan, Claire J. Gorman, Shaun Nielsen, Tonia Russell, Carolina Correa-Ospina, Samitha Fernando, Shafagh A. Waters, Natalia Castaño‐Rodríguez, Si Ming Man, Nicodemus Tedla, Marc R. Wilkins, Nadeem O. Kaakoush
Published: about 3 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: drawProteins
Package to Draw Protein Schematics from Uniprot API output
Papers that mentioned: 6
bioconductor: maser
Mapping Alternative Splicing Events to pRoteins
Papers that mentioned: 3
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
pypi: CIRCexplorer2
Circular RNA analysis toolkits
Papers that mentioned: 79
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284