Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/v12090956

https://doi.org/10.3390/v12090956

Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival

Cited by: 17
Author(s): Allison R. Kolbe, Matthew L. Bendall, Alexander T. Pearson, Doru Paul, Douglas F. Nixon, Marcos Pérez‐Losada, Keith A. Crandall
Published: over 4 years ago

Software Mentions 8

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: tximport

Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367

cran: circlize

Circular Visualization
Papers that mentioned: 260

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
Papers that mentioned: 442

cran: RColorBrewer

ColorBrewer Palettes
Papers that mentioned: 490

cran: survminer

Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473

The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307