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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12861-018-0163-7

https://doi.org/10.1186/s12861-018-0163-7

Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells

Cited by: 4
Author(s): Anna Mantsoki, Guillaume Devailly, Anagha Joshi
Published: over 7 years ago

Software Mentions 13

bioconductor: compEpiTools
Tools for computational epigenomics
Papers that mentioned: 10
Very Likely Science (100)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
Very Likely Science (100)
cran: circlize
Circular Visualization
Papers that mentioned: 260
Very Likely Science (100)
cran: clusterSim
Searching for Optimal Clustering Procedure for a Data Set
Papers that mentioned: 31
Very Likely Science (75)
cran: fastcluster
Fast Hierarchical Clustering Routines for R and 'Python'
Papers that mentioned: 36
Very Likely Science (75)
cran: flexclust
Flexible Cluster Algorithms
Papers that mentioned: 15
Very Likely Science (85)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
pypi: ensembl
Ensembl REST API Client
Papers that mentioned: 212
Very Likely Science (65)
pypi: fastcluster
Fast hierarchical clustering routines for R and Python.
Papers that mentioned: 36
Very Likely Science (80)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
Very Likely Science (90)
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017
Very Likely Science (90)