Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12861-018-0163-7

https://doi.org/10.1186/s12861-018-0163-7

Cited by: 4
Author(s): Anna Mantsoki, Guillaume Devailly, Anagha Joshi
Published: about 6 years ago

Software Mentions 13

bioconductor: compEpiTools

Tools for computational epigenomics
Papers that mentioned: 10

bioconductor: GenomicRanges

Representation and manipulation of genomic intervals
Papers that mentioned: 323

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

cran: circlize

Circular Visualization
Papers that mentioned: 260

cran: clusterSim

Searching for Optimal Clustering Procedure for a Data Set
Papers that mentioned: 31

cran: fastcluster

Fast Hierarchical Clustering Routines for R and 'Python'
Papers that mentioned: 36

cran: flexclust

Flexible Cluster Algorithms
Papers that mentioned: 15

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

pypi: ensembl

Ensembl REST API Client
Papers that mentioned: 212

pypi: fastcluster

Fast hierarchical clustering routines for R and Python.
Papers that mentioned: 36

pypi: MACS

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233

pypi: stats

Calculator-style statistical functions
Papers that mentioned: 3,105

pypi: TopHat

TopHat Platform
Papers that mentioned: 5,017