Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: compEpiTools

https://packages.ecosyste.ms/registries/bioconductor.org/packages/compEpiTools

Tools for computational epigenomics
1 version
Latest release: about 1 year ago
16,724 downloads total

Papers Mentioning compEpiTools 10

10.3389/fonc.2020.00423

Computational Oncology in the Multi-Omics Era: State of the Art
Cited by: 55
Author(s): Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 46
Published: over 4 years ago

Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells
Cited by: 4
Author(s): Anna Mantsoki, Guillaume Devailly, Anagha Joshi
Software Mentions: 13
Published: almost 7 years ago

10.1186/s12859-015-0742-6

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
Cited by: 60
Author(s): Kamal Kishore, Stefano de Pretis, Ryan Lister, Marco J. Morelli, Valerio Bianchi, Bruno Amati, Joseph R. Ecker, Mattia Pelizzola
Software Mentions: 7
Published: about 9 years ago

10.7554/eLife.20235

Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis
Cited by: 4
Author(s): Christina Ernst, Jeremy Pike, Sarah J. Aitken, Hannah K. Long, Nils Eling, Lovorka Stojic, Michelle C. Ward, Frances Connor, Timothy F. Rayner, Margus Lukk, Robert J. Klose, Claudia Kutter, Duncan T. Odom
Software Mentions: 6
Published: about 8 years ago

10.3389/fcell.2021.664178

Differential Transcriptomes and Methylomes of Trophoblast Stem Cells From Naturally-Fertilized and Somatic Cell Nuclear-Transferred Embryos
Cited by: 0
Author(s): Jin Sun, Weisheng Zheng, Wenqiang Liu, Xiaochen Kou, Yanhong Zhao, Zehang Liang, Lu Wang, Zihao Zhang, Jing Xiao, Rui Gao, Shaorong Gao, Cizhong Jiang
Software Mentions: 5
Published: over 3 years ago

10.1038/s41419-021-04169-7

New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia
Cited by: 16
Author(s): Zaira Ianniello, Melissa Sorci, Lavinia Ceci Ginistrelli, Alessia Iaiza, Marcella Marchioni, Claudia Tito, Ernestina Capuano, Silvia Masciarelli, Tiziana Ottone, Cristina Attrotto, Manuela Rizzo, Luca Franceschini, Stefano de Pretis, Maria Teresa Voso, Mattia Pelizzola, Francesco Fazi, Alessandro Fatica
Software Mentions: 5
Published: about 3 years ago

10.3389/fgene.2016.00075

Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions
Cited by: 35
Author(s): Valerio Bianchi, Arnaud Céol, Alessandro G. E. Ogier, Stefano de Pretis, Eugenia Galeota, Kamal Kishore, Pranami Bora, Ottavio Croci, Stefano Campaner, Bruno Amati, Marco J. Morelli, Mattia Pelizzola
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-015-0857-0

Local compartment changes and regulatory landscape alterations in histone H1-depleted cells
Cited by: 53
Author(s): Geert Geeven, Yun Zhu, Byung Ju Kim, Boris Bartholdy, Seung Min Yang, Todd S. Macfarlan, Wesley D. Gifford, Samuel L. Pfaff, Marjon J.A.M. Verstegen, Hugo Borges Pinto, Marit W. Vermunt, Menno P. Creyghton, Patrick J. Wijchers, J Stamatoyannopoulos, Arthur I. Skoultchi, Wouter de Laat
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.dib.2015.02.003

Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data
Cited by: 3
Author(s): Mattia Pelizzola, Marco J. Morelli, Arianna Sabò, Theresia R. Kress, Stefano de Pretis, Bruno Amati
Software Mentions: 2
Published: over 9 years ago

10.1038/s41419-017-0234-x

Genome-wide DNA methylation analysis reveals that mouse chemical iPSCs have closer epigenetic features to mESCs than OSKM-integrated iPSCs
Cited by: 12
Author(s): Wangfang Ping, Jian Hu, Gongcheng Hu, Yawei Song, Qing Xia, Maojin Yao, Shixin Gong, Cizhong Jiang, Hongjie Yao
Software Mentions: 2
Published: almost 7 years ago