Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-015-0742-6

https://doi.org/10.1186/s12859-015-0742-6

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

Cited by: 60
Author(s): Kamal Kishore, Stefano de Pretis, Ryan Lister, Marco J. Morelli, Valerio Bianchi, Bruno Amati, Joseph R. Ecker, Mattia Pelizzola
Published: about 9 years ago

Software Mentions 7

bioconductor: BiSeq

Processing and analyzing bisulfite sequencing data
Papers that mentioned: 33

bioconductor: bsseq

Analyze, manage and store bisulfite sequencing data
Papers that mentioned: 38

bioconductor: compEpiTools

Tools for computational epigenomics
Papers that mentioned: 10

bioconductor: DSS

Dispersion shrinkage for sequencing data
Papers that mentioned: 288

bioconductor: methylKit

DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154

bioconductor: methylPipe

Base resolution DNA methylation data analysis
Papers that mentioned: 9

bioconductor: rtracklayer

R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107