Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: methylPipe

https://packages.ecosyste.ms/registries/bioconductor.org/packages/methylPipe

Base resolution DNA methylation data analysis
1 version
Latest release: 12 months ago
1 dependent package
19,202 downloads total

Papers Mentioning methylPipe 9

10.3389/fonc.2020.00423

Computational Oncology in the Multi-Omics Era: State of the Art
Cited by: 55
Author(s): Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 46
Published: over 4 years ago

DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis
Cited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 10
Published: almost 5 years ago

10.1186/s12859-015-0742-6

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
Cited by: 60
Author(s): Kamal Kishore, Stefano de Pretis, Ryan Lister, Marco J. Morelli, Valerio Bianchi, Bruno Amati, Joseph R. Ecker, Mattia Pelizzola
Software Mentions: 7
Published: about 9 years ago

10.1186/s12864-016-3326-6

TEA: the epigenome platform for Arabidopsis methylome study
Cited by: 3
Author(s): Sheng-Yao Su, Shu-Hwa Chen, I-Hsuan Lu, Yih-Shien Chiang, Yubin Wang, Pao‐Yang Chen, Chung‐Yen Lin
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-017-17460-5

Integrated DNA methylome and transcriptome analysis reveals the ethylene-induced flowering pathway genes in pineapple
Cited by: 22
Author(s): Jiabin Wang, Zhiying Li, Ming Lei, Yuhua Fu, Jiaju Zhao, Meng-Fei Ao, Li Xu
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13072-016-0075-3

Profiling genome-wide DNA methylation
Cited by: 245
Author(s): Wai-Shin Yong, Fei‐Man Hsu, Pao‐Yang Chen
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-35587-x

DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium
Cited by: 24
Author(s): Ofer Yizhar-Barnea, Cristina Valensisi, Naresh Doni Jayavelu, Kamal Kishore, Colin Andrus, Tal Koffler-Brill, Kathy Ushakov, Kobi Perl, Yael Noy, Yoni Bhonker, Mattia Pelizzola, R. David Hawkins, Karen B. Avraham
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.684130

Identification of DNA Methylation and Transcriptomic Profiles Associated With Fruit Mealiness in Prunus persica (L.) Batsch
Cited by: 8
Author(s): Karin Rothkegel, Alonso Espinoza, Dayán Sanhueza, Victoria Lillo-Carmona, Aníbal Riveros, Reinaldo Campos-Vargas, Claudio Meneses
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.111.001362

Surveillance of 3′ Noncoding Transcripts Requires FIERY1 and XRN3 in <i>Arabidopsis</i>
Cited by: 46
Author(s): Y. Kurihara, Robert J. Schmitz, Joseph R. Nery, Matthew D. Schultz, Emiko Okubo-Kurihara, Taeko Morosawa, Maho Tanaka, Tetsuro Toyoda, Motoaki Seki, Joseph R. Ecker
Software Mentions: 1
Published: over 12 years ago