Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13148-019-0795-x

https://doi.org/10.1186/s13148-019-0795-x

DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis

Cited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Published: almost 5 years ago

Software Mentions 10

bioconductor: BiSeq
Processing and analyzing bisulfite sequencing data
Papers that mentioned: 33
bioconductor: MEDIPS
DNA IP-seq data analysis
Papers that mentioned: 89
bioconductor: MEDME
Modelling Experimental Data from MeDIP Enrichment
Papers that mentioned: 20
bioconductor: methylPipe
Base resolution DNA methylation data analysis
Papers that mentioned: 9
bioconductor: methylSig
MethylSig: Differential Methylation Testing for WGBS and RRBS Data
Papers that mentioned: 11
bioconductor: msgbsR
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
Papers that mentioned: 3
bioconductor: Repitools
Epigenomic tools
Papers that mentioned: 14
bioconductor: SMAP
A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
Papers that mentioned: 58
cran: BED
Biological Entity Dictionary (BED)
Papers that mentioned: 49
pypi: Batman
A deployment toolbelt
Papers that mentioned: 20