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Projects: bioconductor: methylSig

https://packages.ecosyste.ms/registries/bioconductor.org/packages/methylSig

MethylSig: Differential Methylation Testing for WGBS and RRBS Data
1 version
Latest release: over 2 years ago
4,073 downloads total

Enhanced Analysis
Educational Contributors: rcavalca@umich.edu jennifer.wokaty@sph.cuny.edu yongpark@pitt.edu
Repository Activity:
Repository Owner: Sartor Lab (organization) Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +10 Educational website
    Repository owner has educational domain website
  • +18 Science terms in README
    9 scientific terms found in README
Very Likely Science (100)

Papers Mentioning methylSig 11

10.1038/s41598-018-19655-w
msgbsR: An R package for analysing methylation-sensitive restriction enzyme sequencing data
Cited by: 10
Author(s): Benjamin Mayne, Shalem Leemaqz, Sam Buckberry, Carlos M. Rodríguez López, Claire T. Roberts, Tina Bianco‐Miotto, James Breen
Software Mentions: 12
Published: about 8 years ago
10.1186/s13148-019-0795-x
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis
Cited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 10
Published: over 6 years ago
10.3389/fgene.2014.00324
Statistical methods for detecting differentially methylated loci and regions
Cited by: 90
Author(s): Mark D. Robinson, Abdullah Kahraman, Charity W. Law, Helen Lindsay, Małgorzata Nowicka, Lukas M. Weber, Xiaobei Zhou
Software Mentions: 9
Published: over 11 years ago
10.1371/journal.pone.0132866
swDMR: A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing
Cited by: 43
Author(s): Zhen Wang, Xianfeng Li, Yi Jiang, Qianzhi Shao, Qi Liu, Bingyu Chen, Dongsheng Huang
Software Mentions: 7
Published: over 10 years ago
10.1186/s12864-016-3326-6
TEA: the epigenome platform for Arabidopsis methylome study
Cited by: 3
Author(s): Sheng-Yao Su, Shu-Hwa Chen, I-Hsuan Lu, Yih-Shien Chiang, Yubin Wang, Pao‐Yang Chen, Chung‐Yen Lin
Software Mentions: 7
Published: over 9 years ago
10.3390/ijerph18157975
Comprehensive Evaluation of Differential Methylation Analysis Methods for Bisulfite Sequencing Data
Cited by: 6
Author(s): Yongjun Piao, Wanxue Xu, Kwang Ho Park, Keun Ho Ryu, Rong Xiang
Software Mentions: 4
Published: over 4 years ago
10.1093/bioinformatics/btu749
M3D: a kernel-based test for spatially correlated changes in methylation profiles
Cited by: 27
Author(s): Tom Mayo, Gabriele Schweikert, Guido Sanguinetti
Software Mentions: 4
Published: over 11 years ago
10.1186/s13742-015-0070-9
SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing
Cited by: 11
Author(s): Shengjie Gao, Dan Zou, Likai Mao, Quan Zhou, Wenlong Jia, Yi Huang, Shancen Zhao, Gang Chen, Song Wu, Dongdong Li, Fei Xia, Huafeng Chen, Maoshan Chen, Torben F. Ørntoft, Lars Bolund, Karina D. Sørensen
Software Mentions: 2
Published: over 10 years ago
10.3390/jcdd7040055
The Needle in the Haystack—Searching for Genetic and Epigenetic Differences in Monozygotic Twins Discordant for Tetralogy of Fallot
Cited by: 10
Author(s): Marcel Grunert, Sandra Appelt, Paul Grossfeld, Silke Sperling
Software Mentions: 1
Published: over 5 years ago
10.1186/s13148-016-0246-x
Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes
Cited by: 21
Author(s): Samantha E. Day, Richard L. Coletta, Joon Young Kim, Latoya E. Campbell, Tonya R. Benjamin, Lori R. Roust, Elena A. De Filippis, Valentin Dinu, Gabriel Q. Shaibi, Lawrence J. Mandarino, Dawn K. Coletta
Software Mentions: 1
Published: over 9 years ago
10.1186/s13148-017-0396-5
Alterations of sorbin and SH3 domain containing 3 (SORBS3) in human skeletal muscle following Roux-en-Y gastric bypass surgery
Cited by: 16
Author(s): Samantha E. Day, Luis Garcı́a, Richard L. Coletta, Latoya E. Campbell, Tonya R. Benjamin, Elena A. De Filippis, James A. Madura, Lawrence J. Mandarino, Lori R. Roust, Dawn K. Coletta
Software Mentions: 1
Published: over 8 years ago