Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: methylSig

https://packages.ecosyste.ms/registries/bioconductor.org/packages/methylSig

MethylSig: Differential Methylation Testing for WGBS and RRBS Data
1 version
Latest release: about 1 year ago
4,073 downloads total

Papers Mentioning methylSig 11

10.1038/s41598-018-19655-w

msgbsR: An R package for analysing methylation-sensitive restriction enzyme sequencing data
Cited by: 10
Author(s): Benjamin Mayne, Shalem Leemaqz, Sam Buckberry, Carlos M. Rodríguez López, Claire T. Roberts, Tina Bianco‐Miotto, James Breen
Software Mentions: 12
Published: almost 7 years ago

10.1186/s13148-019-0795-x

DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis
Cited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 10
Published: almost 5 years ago

10.3389/fgene.2014.00324

Statistical methods for detecting differentially methylated loci and regions
Cited by: 90
Author(s): Mark D. Robinson, Abdullah Kahraman, Charity W. Law, Helen Lindsay, Małgorzata Nowicka, Lukas M. Weber, Xiaobei Zhou
Software Mentions: 9
Published: about 10 years ago

10.1371/journal.pone.0132866

swDMR: A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing
Cited by: 43
Author(s): Zhen Wang, Xianfeng Li, Yi Jiang, Qianzhi Shao, Qi Liu, Bingyu Chen, Dongsheng Huang
Software Mentions: 7
Published: over 9 years ago

10.1186/s12864-016-3326-6

TEA: the epigenome platform for Arabidopsis methylome study
Cited by: 3
Author(s): Sheng-Yao Su, Shu-Hwa Chen, I-Hsuan Lu, Yih-Shien Chiang, Yubin Wang, Pao‐Yang Chen, Chung‐Yen Lin
Software Mentions: 7
Published: almost 8 years ago

10.3390/ijerph18157975

Comprehensive Evaluation of Differential Methylation Analysis Methods for Bisulfite Sequencing Data
Cited by: 6
Author(s): Yongjun Piao, Wanxue Xu, Kwang Ho Park, Keun Ho Ryu, Rong Xiang
Software Mentions: 4
Published: over 3 years ago

10.1093/bioinformatics/btu749

M3D: a kernel-based test for spatially correlated changes in methylation profiles
Cited by: 27
Author(s): Tom Mayo, Gabriele Schweikert, Guido Sanguinetti
Software Mentions: 4
Published: about 10 years ago

10.1186/s13742-015-0070-9

SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing
Cited by: 11
Author(s): Shengjie Gao, Dan Zou, Likai Mao, Quan Zhou, Wenlong Jia, Yi Huang, Shancen Zhao, Gang Chen, Song Wu, Dongdong Li, Fei Xia, Huafeng Chen, Maoshan Chen, Torben F. Ørntoft, Lars Bolund, Karina D. Sørensen
Software Mentions: 2
Published: over 9 years ago

10.3390/jcdd7040055

The Needle in the Haystack—Searching for Genetic and Epigenetic Differences in Monozygotic Twins Discordant for Tetralogy of Fallot
Cited by: 10
Author(s): Marcel Grunert, Sandra Appelt, Paul Grossfeld, Silke Sperling
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13148-016-0246-x

Next-generation sequencing methylation profiling of subjects with obesity identifies novel gene changes
Cited by: 21
Author(s): Samantha E. Day, Richard L. Coletta, Joon Young Kim, Latoya E. Campbell, Tonya R. Benjamin, Lori R. Roust, Elena A. De Filippis, Valentin Dinu, Gabriel Q. Shaibi, Lawrence J. Mandarino, Dawn K. Coletta
Software Mentions: 1
Published: over 8 years ago

10.1186/s13148-017-0396-5

Alterations of sorbin and SH3 domain containing 3 (SORBS3) in human skeletal muscle following Roux-en-Y gastric bypass surgery
Cited by: 16
Author(s): Samantha E. Day, Luis Garcı́a, Richard L. Coletta, Latoya E. Campbell, Tonya R. Benjamin, Elena A. De Filippis, James A. Madura, Lawrence J. Mandarino, Lori R. Roust, Dawn K. Coletta
Software Mentions: 1
Published: about 7 years ago