Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Batman
https://packages.ecosyste.ms/registries/pypi.org/packages/Batman
A deployment toolbelt
16 versions
Latest release: about 11 years ago
128 downloads last month
Papers Mentioning Batman 20
10.1186/s13148-019-0795-x
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysisCited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 10
Published: almost 5 years ago
10.18632/oncotarget.16544
The integrative metabolomic-transcriptomic landscape of glioblastome multiformeCited by: 20
Author(s): Dieter Henrik Heiland, Jakob Wörner, Jan Gerrit Haaker, Daniel Delev, Nils Pompe, Bianca Mercas, Pamela Franco, Annette Gäbelein, Sabrina Heynckes, Dietmar Pfeifer, Stefan Weber, Irina Mader, Oliver Schnell
Software Mentions: 6
Published: over 7 years ago
10.7717/peerj-cs.232
On-demand virtual research environments using microservicesCited by: 10
Author(s): Marco Capuccini, Anders Larsson, Matteo Carone, Jon Ander Novella, Noureddin Sadawi, Jianliang Gao, Salman Toor, Ola Spjuth
Software Mentions: 5
Published: about 5 years ago
10.1186/2047-217X-1-3
Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiersCited by: 40
Author(s): Gareth A. Wilson, Pawandeep Dhami, Andrew Feber, Daniel Cortázar, Yuka Suzuki, Reiner Schulz, Primo Schär, Stephan Beck
Software Mentions: 5
Published: over 12 years ago
10.1186/gb-2014-15-2-r35
BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approachCited by: 26
Author(s): Andrea Riebler, Mirco Menigatti, Jenny Z. Song, Aaron L. Statham, Clare Stirzaker, Nadiya Mahmud, Charles A. Mein, Susan J. Clark, Mark D. Robinson
Software Mentions: 5
Published: almost 11 years ago
10.1038/srep32459
Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approachCited by: 39
Author(s): Qun Qiao, Séverine Le Manach, Benoît Sotton, Hélène Huet, Evelyne Duvernois-Berthet, Alain Paris, Clément Duval, Loïc Ponger, Arul Marie, Alain Blond, L. Matheron, Joëlle Vinh, G. Bolbach, Chakib Djédiat, Cécile Bernard, Marc Edery, Benjamin Marie
Software Mentions: 3
Published: about 8 years ago
10.18632/aging.203220
Clinical characterization and therapeutic targets of vitamin A in patients with hepatocholangiocarcinoma and coronavirus diseaseCited by: 6
Author(s): Liang Xiao, Rui Zhou, Yu Liu, Yang Lu, Min Su, Keng Po Lai
Software Mentions: 2
Published: over 3 years ago
10.3390/metabo9070123
NMR Spectroscopy for Metabolomics ResearchCited by: 572
Author(s): Abdul‐Hamid Emwas, Raja Roy, Roy T. McKay, Leonardo Tenori, Edoardo Saccenti, G. A. Nagana Gowda, Daniel Raftery, Fatimah Alahmari, Łukasz Jaremko, Mariusz Jaremko, David S. Wishart
Software Mentions: 2
Published: over 5 years ago
10.3390/molecules25215128
Quantitative NMR-Based Biomedical Metabolomics: Current Status and ApplicationsCited by: 71
Author(s): Alexandra Crook, Robert Powers
Software Mentions: 2
Published: about 4 years ago
10.7717/peerj.11571
Assessing of evapotranspiration models using limited climatic data in Southeast Anatolian Project Region of TurkeyCited by: 4
Author(s): Yusuf Aydın
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0026054
Next-Generation Sequencing of Apoptotic DNA Breakpoints Reveals Association with Actively Transcribed Genes and Gene TranslocationsCited by: 11
Author(s): Melissa J. Fullwood, Joanne Lee, Lei Lin, Guoliang Li, Mikael Huss, Patrick Ng, Wing-Kin Sung, Shirish Shenolikar
Software Mentions: 2
Published: about 13 years ago
10.1186/gb-2010-11-2-r22
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencingCited by: 254
Author(s): Guoliang Li, Melissa J. Fullwood, Xu Han, Fabianus Hendriyan Mulawadi, Stoyan Velkov, Vinsensius B. Vega, Pramila Ariyaratne, Yusoff Bin Mohamed, Hong Ooi, Chandana Tennakoon, Chia Lin Wei, Yijun Ruan, Wing-Kin Sung
Software Mentions: 2
Published: almost 15 years ago
10.1038/srep14699
MeSiC: A Model-Based Method for Estimating 5 mC Levels at Single-CpG Resolution from MeDIP-seqCited by: 11
Author(s): Yun Xiao, Fulong Yu, Lin Pang, Hongying Zhao, Ling Liu, Guanxiong Zhang, Tingting Liu, Hongyi Zhang, Huihui Fan, Yan Zhang, Bo Pang, Xia Li
Software Mentions: 2
Published: about 9 years ago
10.3389/fphar.2020.01211
Target Analysis and Mechanism of Podophyllotoxin in the Treatment of Triple-Negative Breast CancerCited by: 16
Author(s): Wenfeng Zhang, Cun Liu, Jie Li, Ruijuan Liu, Jing Zhuang, Fubin Feng, Yan Yao, Changgang Sun
Software Mentions: 1
Published: over 4 years ago
10.3390/metabo11070452
An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1DCited by: 7
Author(s): Martina Häckl, Philipp Tauber, Frank Schweda, Helena U. Zacharias, Michael Altenbuchinger, Peter J. Oefner, Wolfram Gronwald
Software Mentions: 1
Published: over 3 years ago
10.1186/s13148-015-0077-1
DNA methylation and gene expression profiles show novel regulatory pathways in hepatocellular carcinomaCited by: 74
Author(s): Silvia Udali, Patrizia Guarini, Andrea Ruzzenente, Alberto Ferrarini, Alfredo Guglielmi, Valentina Lotto, Paola Tononi, Patrizia Pattini, Sara Moruzzi, Tommaso Campagnaro, Simone Conci, Oliviero Olivieri, Roberto Corrocher, Massimo Delledonne, Seul Ki Choi, Simonetta Friso
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0033213
Genome Wide Analysis of Acute Myeloid Leukemia Reveal Leukemia Specific Methylome and Subtype Specific Hypomethylation of RepeatsCited by: 56
Author(s): Marwa H. Saied, Jacek Marzec, Sabah Khalid, Paul A. Smith, Thomas A. Down, Vardhman K. Rakyan, Gerard J. Molloy, Manoj Raghavan, Silvana Debernardi, Bryan D. Young
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2148-12-144
Genome-wide DNA methylation analyses in the brain reveal four differentially methylated regions between humans and non-human primatesCited by: 14
Author(s): Jinkai Wang, Xiangyu Cao, Yan Feng Zhang, Bing Su
Software Mentions: 1
Published: over 12 years ago
10.3389/fendo.2017.00327
Exenatide Improves Bone Quality in a Murine Model of Genetically Inherited Type 2 Diabetes MellitusCited by: 16
Author(s): Marie Pereira, Stéphanie Gohin, Jean-Paul Roux, Amy Fisher, Mark E. Cleasby, Guillaume Mabilleau, Chantal Chenu
Software Mentions: 1
Published: about 7 years ago
10.3389/fmolb.2021.698337
Nuclear Magnetic Resonance Spectroscopy in Clinical Metabolomics and Personalized Medicine: Current Challenges and PerspectivesCited by: 36
Author(s): Marine P.M. Letertre, Patrick Giraudeau, Pascal De Tullio
Software Mentions: 1
Published: about 3 years ago