Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Batman

https://packages.ecosyste.ms/registries/pypi.org/packages/Batman

A deployment toolbelt
16 versions
Latest release: almost 11 years ago
128 downloads last month

Papers Mentioning Batman 20

DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis
Cited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 10
Published: almost 5 years ago

10.18632/oncotarget.16544

The integrative metabolomic-transcriptomic landscape of glioblastome multiforme
Cited by: 20
Author(s): Dieter Henrik Heiland, Jakob Wörner, Jan Gerrit Haaker, Daniel Delev, Nils Pompe, Bianca Mercas, Pamela Franco, Annette Gäbelein, Sabrina Heynckes, Dietmar Pfeifer, Stefan Weber, Irina Mader, Oliver Schnell
Software Mentions: 6
Published: over 7 years ago

10.7717/peerj-cs.232

On-demand virtual research environments using microservices
Cited by: 10
Author(s): Marco Capuccini, Anders Larsson, Matteo Carone, Jon Ander Novella, Noureddin Sadawi, Jianliang Gao, Salman Toor, Ola Spjuth
Software Mentions: 5
Published: almost 5 years ago

10.1186/2047-217X-1-3

Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers
Cited by: 40
Author(s): Gareth A. Wilson, Pawandeep Dhami, Andrew Feber, Daniel Cortázar, Yuka Suzuki, Reiner Schulz, Primo Schär, Stephan Beck
Software Mentions: 5
Published: about 12 years ago

10.1186/gb-2014-15-2-r35

BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach
Cited by: 26
Author(s): Andrea Riebler, Mirco Menigatti, Jenny Z. Song, Aaron L. Statham, Clare Stirzaker, Nadiya Mahmud, Charles A. Mein, Susan J. Clark, Mark D. Robinson
Software Mentions: 5
Published: over 10 years ago

10.1038/srep32459

Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approach
Cited by: 39
Author(s): Qun Qiao, Séverine Le Manach, Benoît Sotton, Hélène Huet, Evelyne Duvernois-Berthet, Alain Paris, Clément Duval, Loïc Ponger, Arul Marie, Alain Blond, L. Matheron, Joëlle Vinh, G. Bolbach, Chakib Djédiat, Cécile Bernard, Marc Edery, Benjamin Marie
Software Mentions: 3
Published: about 8 years ago

10.18632/aging.203220

Clinical characterization and therapeutic targets of vitamin A in patients with hepatocholangiocarcinoma and coronavirus disease
Cited by: 6
Author(s): Liang Xiao, Rui Zhou, Yu Liu, Yang Lu, Min Su, Keng Po Lai
Software Mentions: 2
Published: about 3 years ago

10.3390/metabo9070123

NMR Spectroscopy for Metabolomics Research
Cited by: 572
Author(s): Abdul‐Hamid Emwas, Raja Roy, Roy T. McKay, Leonardo Tenori, Edoardo Saccenti, G. A. Nagana Gowda, Daniel Raftery, Fatimah Alahmari, Łukasz Jaremko, Mariusz Jaremko, David S. Wishart
Software Mentions: 2
Published: about 5 years ago

10.3390/molecules25215128

Quantitative NMR-Based Biomedical Metabolomics: Current Status and Applications
Cited by: 71
Author(s): Alexandra Crook, Robert Powers
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.11571

Assessing of evapotranspiration models using limited climatic data in Southeast Anatolian Project Region of Turkey
Cited by: 4
Author(s): Yusuf Aydın
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0026054

Next-Generation Sequencing of Apoptotic DNA Breakpoints Reveals Association with Actively Transcribed Genes and Gene Translocations
Cited by: 11
Author(s): Melissa J. Fullwood, Joanne Lee, Lei Lin, Guoliang Li, Mikael Huss, Patrick Ng, Wing-Kin Sung, Shirish Shenolikar
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2010-11-2-r22

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
Cited by: 254
Author(s): Guoliang Li, Melissa J. Fullwood, Xu Han, Fabianus Hendriyan Mulawadi, Stoyan Velkov, Vinsensius B. Vega, Pramila Ariyaratne, Yusoff Bin Mohamed, Hong Ooi, Chandana Tennakoon, Chia Lin Wei, Yijun Ruan, Wing-Kin Sung
Software Mentions: 2
Published: over 14 years ago

10.1038/srep14699

MeSiC: A Model-Based Method for Estimating 5 mC Levels at Single-CpG Resolution from MeDIP-seq
Cited by: 11
Author(s): Yun Xiao, Fulong Yu, Lin Pang, Hongying Zhao, Ling Liu, Guanxiong Zhang, Tingting Liu, Hongyi Zhang, Huihui Fan, Yan Zhang, Bo Pang, Xia Li
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphar.2020.01211

Target Analysis and Mechanism of Podophyllotoxin in the Treatment of Triple-Negative Breast Cancer
Cited by: 16
Author(s): Wenfeng Zhang, Cun Liu, Jie Li, Ruijuan Liu, Jing Zhuang, Fubin Feng, Yan Yao, Changgang Sun
Software Mentions: 1
Published: about 4 years ago

10.3390/metabo11070452

An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D
Cited by: 7
Author(s): Martina Häckl, Philipp Tauber, Frank Schweda, Helena U. Zacharias, Michael Altenbuchinger, Peter J. Oefner, Wolfram Gronwald
Software Mentions: 1
Published: about 3 years ago

10.1186/s13148-015-0077-1

DNA methylation and gene expression profiles show novel regulatory pathways in hepatocellular carcinoma
Cited by: 74
Author(s): Silvia Udali, Patrizia Guarini, Andrea Ruzzenente, Alberto Ferrarini, Alfredo Guglielmi, Valentina Lotto, Paola Tononi, Patrizia Pattini, Sara Moruzzi, Tommaso Campagnaro, Simone Conci, Oliviero Olivieri, Roberto Corrocher, Massimo Delledonne, Seul Ki Choi, Simonetta Friso
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0033213

Genome Wide Analysis of Acute Myeloid Leukemia Reveal Leukemia Specific Methylome and Subtype Specific Hypomethylation of Repeats
Cited by: 56
Author(s): Marwa H. Saied, Jacek Marzec, Sabah Khalid, Paul A. Smith, Thomas A. Down, Vardhman K. Rakyan, Gerard J. Molloy, Manoj Raghavan, Silvana Debernardi, Bryan D. Young
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-12-144

Genome-wide DNA methylation analyses in the brain reveal four differentially methylated regions between humans and non-human primates
Cited by: 14
Author(s): Jinkai Wang, Xiangyu Cao, Yan Feng Zhang, Bing Su
Software Mentions: 1
Published: about 12 years ago

10.3389/fendo.2017.00327

Exenatide Improves Bone Quality in a Murine Model of Genetically Inherited Type 2 Diabetes Mellitus
Cited by: 16
Author(s): Marie Pereira, Stéphanie Gohin, Jean-Paul Roux, Amy Fisher, Mark E. Cleasby, Guillaume Mabilleau, Chantal Chenu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmolb.2021.698337

Nuclear Magnetic Resonance Spectroscopy in Clinical Metabolomics and Personalized Medicine: Current Challenges and Perspectives
Cited by: 36
Author(s): Marine P.M. Letertre, Patrick Giraudeau, Pascal De Tullio
Software Mentions: 1
Published: almost 3 years ago