Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: MEDME
https://packages.ecosyste.ms/registries/bioconductor.org/packages/MEDME
Modelling Experimental Data from MeDIP Enrichment
1 version
Latest release: about 1 year ago
27,840 downloads total
Papers Mentioning MEDME 20
10.1186/s13148-019-0795-x
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysisCited by: 50
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 10
Published: almost 5 years ago
10.1186/2047-217X-1-3
Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiersCited by: 40
Author(s): Gareth A. Wilson, Pawandeep Dhami, Andrew Feber, Daniel Cortázar, Yuka Suzuki, Reiner Schulz, Primo Schär, Stephan Beck
Software Mentions: 5
Published: over 12 years ago
10.1186/gb-2014-15-2-r35
BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approachCited by: 26
Author(s): Andrea Riebler, Mirco Menigatti, Jenny Z. Song, Aaron L. Statham, Clare Stirzaker, Nadiya Mahmud, Charles A. Mein, Susan J. Clark, Mark D. Robinson
Software Mentions: 5
Published: almost 11 years ago
10.1371/journal.pone.0154836
Alteration of Gene Expression, DNA Methylation, and Histone Methylation in Free Radical Scavenging Networks in Adult Mouse Hippocampus following Fetal Alcohol ExposureCited by: 44
Author(s): Eric Chater‐Diehl, Benjamin I. Laufer, Christina A Castellani, Bonnie Alberry, Shiva M. Singh
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0145585
Epigenetic Alterations in Density Selected Human Spermatozoa for Assisted ReproductionCited by: 20
Author(s): Bolan Yu, Hua Zhou, Min Liu, Ting Zheng, Lu Jiang, Mei Zhao, Xiaohong Xu, Zhaofeng Huang
Software Mentions: 4
Published: almost 9 years ago
10.3389/fcimb.2020.00250
Combined Analysis of DNA Methylome and Transcriptome Reveal Novel Candidate Genes Related to Porcine Escherichia coli F4ab/ac-Induced DiarrheaCited by: 7
Author(s): Wenwen Wang, Chuanli Zhou, Hui Tang, Ying Yu, Qin Zhang
Software Mentions: 3
Published: over 4 years ago
10.1186/s40303-015-0013-5
Insights into the origin of DNA methylation differences between monozygotic twins discordant for schizophreniaCited by: 9
Author(s): Melkaye G Melka, Christina A Castellani, Richard O’Reilly, Shiva M. Singh
Software Mentions: 3
Published: over 9 years ago
10.1186/s12920-015-0093-1
DNA methylation differences in monozygotic twin pairs discordant for schizophrenia identifies psychosis related genes and networksCited by: 43
Author(s): Christina A Castellani, Benjamin I. Laufer, Melkaye G Melka, Eric J. Diehl, Richard O’Reilly, Shiva M. Singh
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0203155
Integrated analysis of DNA methylation profiling and gene expression profiling identifies novel markers in lung cancer in Xuanwei, ChinaCited by: 16
Author(s): Juan Wang, Yong Duan, Qinghe Meng, Rong Gong, Chong Guo, Ying Zhao, Yanliang Zhang
Software Mentions: 3
Published: about 6 years ago
10.1186/1868-7083-6-1
The effects of olanzapine on genome-wide DNA methylation in the hippocampus and cerebellumCited by: 55
Author(s): Melkaye G Melka, Benjamin I. Laufer, Patrick P. McDonald, Christina A Castellani, Nagalingam Rajakumar, Richard O’Reilly, Shiva M. Singh
Software Mentions: 3
Published: almost 11 years ago
10.1242/dmm.010975
Long-lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in miceCited by: 105
Author(s): Benjamin I. Laufer, Katarzyna Mantha, Morgan L. Kleiber, Eric J. Diehl, Sean M. F. Addison, Shiva M. Singh
Software Mentions: 3
Published: almost 12 years ago
10.1038/srep08748
Genome-wide Mapping Reveals Conservation of Promoter DNA Methylation Following Chicken DomesticationCited by: 16
Author(s): Qinghe Li, Yuanyuan Wang, Xiaoxiang Hu, Yaofeng Zhao, Ning Li
Software Mentions: 3
Published: over 9 years ago
10.1038/srep19162
DNA methylation is critical for tooth agenesis: implications for sporadic non-syndromic anodontia and hypodontiaCited by: 37
Author(s): Jing Wang, Ke Sun, Yin Shen, Yuanzhi Xu, Jing Xie, Ru Huang, Yiming Zhang, Chenyuan Xu, Xu Zhang, Raorao Wang, Yunfeng Lin
Software Mentions: 3
Published: almost 9 years ago
10.1155/2018/8929057
The Effect of Citalopram on Genome-Wide DNA Methylation of Human CellsCited by: 10
Author(s): Riya R. Kanherkar, Bruk Getachew, Joseph Ben-Sheetrit, Sudhir Varma, Thomas Heinbockel, Yousef Tizabi, Antonei B. Csóka
Software Mentions: 3
Published: over 6 years ago
10.1186/s12859-018-2574-7
MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment dataCited by: 6
Author(s): Jingting Xu, Shimeng Liu, Ping Yin, Serdar E. Bulun, Yang Dai
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12263-020-00681-1
Maternal folic acid impacts DNA methylation profile in male rat offspring implicated in neurodevelopment and learning/memory abilitiesCited by: 15
Author(s): Xinyan Wang, Zhenshu Li, Yun Zhu, Jing Yan, Huan Liu, Guowei Huang, Wen Li
Software Mentions: 3
Published: almost 4 years ago
10.1038/srep29390
Combined analysis of DNA methylome and transcriptome reveal novel candidate genes with susceptibility to bovine Staphylococcus aureus subclinical mastitisCited by: 40
Author(s): Mengyuan Song, Yanghua He, Huangkai Zhou, Yi Zhang, Xizhi Li, Ying Yu
Software Mentions: 2
Published: over 8 years ago
10.1186/1471-2164-13-563
Hepatitis B viral core protein disrupts human host gene expression by binding to promoter regionsCited by: 46
Author(s): Yanhai Guo, Wei Kang, Xiaoying Li, Yong-Nian Li, Xiang An, Yonglan Liu, Jingbo Zhao, Ju Zhang, Yan Zhang
Software Mentions: 2
Published: almost 13 years ago
10.3389/fgene.2014.00161
Long-term genomic and epigenomic dysregulation as a consequence of prenatal alcohol exposure: a model for fetal alcohol spectrum disordersCited by: 50
Author(s): Morgan L. Kleiber, Eric J. Diehl, Benjamin I. Laufer, Katarzyna Mantha, Aniruddho Chokroborty-Hoque, Bonnie Alberry, Shiva M. Singh
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0033853
Low-Dose Cd Induces Hepatic Gene Hypermethylation, along with the Persistent Reduction of Cell Death and Increase of Cell Proliferation in Rats and MiceCited by: 42
Author(s): Bo Wang, Yang Li, Yi Tan, Xiao Miao, Xudong Liu, Chen Shao, Xiaohui Yang, Subat Turdi, Li Ma, Jun Ren, Lu Cai
Software Mentions: 1
Published: over 12 years ago