cran: clusterSim | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.01474

Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
Cited by: 24
Author(s): Flavia Flaviani, Declan C. Schroeder, Karen Lebret, Cecilia Balestreri, Andrea Highfield, Joanna L. Schroeder, Sally Thorpe, Karen Moore, Konrad Pasckiewicz, Maya C. Pfaff, Edward P. Rybicki
Software Mentions: 27
Published: over 6 years ago

10.3390/plants10020247

Machine Learning Applications and Optimization of Clustering Methods Improve the Selection of Descriptors in Blackberry Germplasm Banks
Cited by: 5
Author(s): Juan Camilo Henao-Rojas, María Gladis Rosero-Alpala, Carolina Ortiz-Muñoz, Carlos Enrique Velásquez-Arroyo, William A. León-Rueda, Joaquín Guillermo Ramírez‐Gil
Software Mentions: 19
Published: almost 4 years ago

10.1186/1471-2105-10-363

A novel R-package graphic user interface for the analysis of metabonomic profiles
Cited by: 51
Author(s): José Luis Izquierdo-García, Ignacio Rodríguez, Angelos Kyriazis, Palmira Villa, Pilar Barreiro Elorza, Manuel Desco, Jesús Ruíz-Cabello
Software Mentions: 13
Published: about 15 years ago

10.1186/s12861-018-0163-7

Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells
Cited by: 4
Author(s): Anna Mantsoki, Guillaume Devailly, Anagha Joshi
Software Mentions: 13
Published: almost 7 years ago

10.1093/bioinformatics/btz704

Spectrum: fast density-aware spectral clustering for single and multi-omic data
Cited by: 43
Author(s): Christopher R. John, David S. Watson, Michael R. Barnes, Costantino Pitzalis, Myles Lewis
Software Mentions: 10
Published: over 5 years ago

10.1186/s40168-018-0592-3

Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition
Cited by: 73
Author(s): Jesse R. Willis, Pedro González-Torres, Alexandros A. Pittis, Luis A. Bejarano, Luca Cozzuto, Núria Andreu, Miriam Alloza-Trabado, Antònia Valentín, Ewa Księżopolska, Harris Onywera, Magda Montfort, Antonio Hermoso, Susana Iraola-Guzmán, Ester Saus, Annick Labeeuw, Carlo Carolis, Jochen Hecht, Julia Ponomarenko, Toni Gabaldón
Software Mentions: 9
Published: about 6 years ago

10.3390/nu12061779

Maternal Microbiota, Cortisol Concentration, and Post-Partum Weight Recovery Are Dependent on Mode of Delivery
Cited by: 7
Author(s): Marta Selma‐Royo, Izaskun García-Mantrana, Marta Calatayud, Anna Parra-Llorca, Cecilia Martínez‐Costa, María Carmen Collado
Software Mentions: 9
Published: over 4 years ago

10.3389/fpls.2019.01380

The Development of Hyperspectral Distribution Maps to Predict the Content and Distribution of Nitrogen and Water in Wheat (Triticum aestivum)
Cited by: 52
Author(s): Brooke Bruning, Huajian Liu, Chris Brien, Bettina Berger, Mervyn K. Lewis, Trevor Garnett
Software Mentions: 9
Published: about 5 years ago

10.1155/2021/8892849

Correlation Analysis between GDM and Gut Microbial Composition in Late Pregnancy
Cited by: 17
Author(s): Genxia Li, Pan Yin, Shuhui Chu, Wen Gao, Shihong Cui, Shuhua Guo, Yajuan Xu, Enwu Yuan, Texuan Zhu, Jie You, Junya Zhang, Manman Yang
Software Mentions: 8
Published: almost 4 years ago

10.1186/s12859-017-1998-9

Thresher: determining the number of clusters while removing outliers
Cited by: 36
Author(s): Min Wang, Zachary B. Abrams, Steven M. Kornblau, Kevin R. Coombes
Software Mentions: 8
Published: almost 7 years ago

10.1186/1471-2105-13-270

Combining multiple hypothesis testing and affinity propagation clustering leads to accurate, robust and sample size independent classification on gene expression data
Cited by: 11
Author(s): Αλέξανδρος Σακελλαρίου, Despina Sanoudou, George M. Spyrou
Software Mentions: 7
Published: about 12 years ago

10.1186/s40168-016-0222-x

Gut microbiota dysbiosis contributes to the development of hypertension
Cited by: 972
Author(s): Jingjing Li, Fangqing Zhao, Yidan Wang, Junru Chen, Jie Tao, Gang Tian, Shouling Wu, Wenbin Liu, Qinghua Cui, Bin Geng, Weili Zhang, Ryan Weldon, Kelda Auguste, Lei Yang, Xiaoyan Liu, Li Chen, Xinchun Yang, Baoli Zhu, Jun Cai
Software Mentions: 7
Published: almost 8 years ago

10.3390/microorganisms9030557

The Composition and Diversity of the Gut Microbiota in Children Is Modifiable by the Household Dogs: Impact of a Canine-Specific Probiotic
Cited by: 10
Author(s): Carlos Gómez-Gallego, Mira Forsgren, Marta Selma‐Royo, Merja Nermes, María Carmen Collado, Seppo Salminen, Shea Beasley, Erika Isolauri
Software Mentions: 7
Published: almost 4 years ago

10.1038/srep22164

Bacterial diversity in saliva and oral health-related conditions: the Hisayama Study
Cited by: 201
Author(s): Toru Takeshita, Shinya Kageyama, Michiko Furuta, Hideyuki Tsuboi, Kenji Takeuchi, Yukie Shibata, Yoshihiro Shimazaki, Sumio Akifusa, Toshiharu Ninomiya, Yutaka Kiyohara, Yoshihisa Yamashita
Software Mentions: 7
Published: almost 9 years ago

10.3390/microorganisms8020175

Biostimulating Gut Microbiome with Bilberry Anthocyanin Combo to Enhance Anti-PD-L1 Efficiency against Murine Colon Cancer
Cited by: 35
Author(s): Xuerun Liu, Luoyang Wang, Nan Jing, Guoqiang Jiang, Zheng Liu
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-015-0107-4

Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
Cited by: 109
Author(s): Pål Trosvik, Eric J. de Muinck
Software Mentions: 6
Published: about 9 years ago

10.1186/1471-2105-14-351

On the amyloid datasets used for training PAFIG how (not) to extend the experimental dataset of hexapeptides
Cited by: 10
Author(s): Małgorzata Kotulska, Olgierd Unold
Software Mentions: 6
Published: about 11 years ago

10.1038/s41598-020-80533-5

Structural aspects of lesional and non-lesional skin microbiota reveal key community changes in leprosy patients from India
Cited by: 5
Author(s): Nitin Bayal, Sunil Nagpal, Mohammed Monzoorul Haque, Milind S. Patole, Yogesh S. Shouche, Shekhar C. Mande, Sharmila S. Mande
Software Mentions: 6
Published: almost 4 years ago

10.3390/microorganisms7010004

The Microbial Communities of Leaves and Roots Associated with Turtle Grass (Thalassia testudinum) and Manatee Grass (Syringodium filliforme) are Distinct from Seawater and Sediment Communities, but Are Similar between Species and Sampling Sites
Cited by: 41
Author(s): Kelly Ugarelli, Peeter Laas, Ulrich Stingl
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-020-00995-7

Characterization of the human skin resistome and identification of two microbiota cutotypes
Cited by: 30
Author(s): Zhiming Li, Jingjing Xia, Liuyiqi Jiang, Yimei Tan, Yitai An, Xiaodong Zhu, Jie Ruan, Zhihua Chen, Hefu Zhen, Yanyun Ma, Zhuye Jie, Liang Xiao, Huanming Yang, Jian Wang, Karsten Kristiansen, Xun Xu, Li Jin, Chao Nie, Jean Krutmann, Xiao Liu, Jiucun Wang
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2016.00774

Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment
Cited by: 19
Author(s): Katherine S. Dawson, Silvan Scheller, Jesse G. Dillon, Victoria J. Orphan
Software Mentions: 5
Published: over 8 years ago

10.3390/ijms22041778

Association of Maternal Microbiota and Diet in Cord Blood Cytokine and Immunoglobulin Profiles
Cited by: 11
Author(s): Karla Rio-Aigé, Ignasi Azagra-Boronat, Malén Massot-Cladera, Marta Selma‐Royo, Anna Parra-Llorca, Sonia González, Izaskun García-Mantrana, Cristina Castellote, María J. Rodríguez-Lagunas, María Carmen Collado, Francisco J. Pérez-Cano
Software Mentions: 5
Published: almost 4 years ago

10.3390/jcm10071430

Pre-Processing Method for Contouring the Uptake Levels of [18F] FDG for Enhanced Specificity of PET Imaging of Solitary Hypermetabolic Pulmonary Nodules
Cited by: 0
Author(s): Piotr Szumowski, Artur Szklarzewski, Łukasz Żukowski, Saeid Abdelrazek, Małgorzata Mojsak, Katarzyna Porębska, Ewa Sierko, Janusz Myśliwiec
Software Mentions: 4
Published: over 3 years ago

10.3390/ijms19030666

Phenotyping of Chronic Obstructive Pulmonary Disease Based on the Integration of Metabolomes and Clinical Characteristics
Cited by: 34
Author(s): Kalle Kilk, Argo Aug, Aigar Ottas, Ursel Soomets, Siiri Altraja, Alan Altraja
Software Mentions: 4
Published: almost 7 years ago

10.3389/fimmu.2018.02065

Inflammatory Endotypes and Microbial Associations in Chronic Rhinosinusitis
Cited by: 41
Author(s): Michael Hoggard, Sharon Waldvogel-Thurlow, Melissa Zoing, Kevin Chang, Fiona J. Radcliff, Brett Wagner Mackenzie, Kristi Biswas, Richard Douglas, Michael W. Taylor
Software Mentions: 4
Published: over 6 years ago

10.1016/j.gpb.2020.06.011

Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock
Cited by: 28
Author(s): Wanglin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long
Software Mentions: 3
Published: about 4 years ago

10.1038/srep26752

Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles and gastrointestinal complaints
Cited by: 212
Author(s): Isabelle Mack, Ulrich Cuntz, Claudia Grämer, Sabrina Niedermaier, Charlotte Pohl, Andreas Schwiertz, Kurt Zimmermann, Stephan Zipfel, Paul Enck, John Penders
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-11543-z

Highly diversified expansions shaped the evolution of membrane bound proteins in metazoans
Cited by: 13
Author(s): Misty M. Attwood, Arunkumar Krishnan, Markus Sällman Almén, Helgi B. Schiöth
Software Mentions: 3
Published: about 7 years ago

10.1186/s40168-019-0709-3

Skin microbiome modulation induced by probiotic solutions
Cited by: 69
Author(s): Bernhard Paetzold, Jesse R. Willis, José Pinto de Lima, Nastassia Knödlseder, Holger Brüggemann, Sven R Quist, Toni Gabaldón, Marc Güell
Software Mentions: 1
Published: over 5 years ago

10.1186/1752-0509-7-119

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes
Cited by: 28
Author(s): ClarLynda R. Williams-DeVane, David M. Reif, Elaine Cohen Hubal, Pierre R. Bushel, Edward Hudgens, Jane Gallagher, Stephen W. Edwards
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-019-5476-9

ENIGMA: an enterotype-like unigram mixture model for microbial association analysis
Cited by: 3
Author(s): Kayoko Abe, Masaaki Hirayama, Kinji Ohno, Teppei Shimamura
Software Mentions: 1
Published: over 5 years ago

Ecosyste.ms: Papers

Projects: cran: clusterSim

Papers Mentioning clusterSim 31