Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.58993

https://doi.org/10.7554/eLife.58993

Cited by: 23
Author(s): Kathleen Greenham, Ryan C. Sartor, Stevan Zorich, Ping Lou, Todd C. Mockler, C. Robertson McClung
Published: over 3 years ago

Software Mentions 12

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GENIE3
GEne Network Inference with Ensemble of trees
Papers that mentioned: 172
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Papers that mentioned: 119
bioconductor: rain
Rhythmicity Analysis Incorporating Non-parametric Methods
Papers that mentioned: 2
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: DiPALM
Differential Pattern Analysis via Linear Modeling
Papers that mentioned: 1
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: rain
A flexible and extendable automated builder.
Papers that mentioned: 2