bioconductor: GSEABase | Projects

10.1002/1878-0261.12960

KRAS mutant rectal cancer cells interact with surrounding fibroblasts to deplete the extracellular matrix
Cited by: 6
Author(s): Jin K. Kim, Michael R. Marco, Seo‐Hyun Choi, Xuan Qu, Chin-Tung Chen, Moshe Elkabets, Lauren Fairchild, Oliver Chow, Francisco M. Barriga, Lukas E. Dow, Kevin P. O’Rourke, Bryan Szeglin, Dmitry Yarilin, Sho Fujisawa, Katia Manova‐Todorova, Philip B. Paty, Jinru Shia, Christina Leslie, J. Joshua Smith, Scott W. Lowe, Raphael Pelossof, Francisco Sánchez-Vega, Julio García-Aguilar
Software Mentions: 18
Published: about 3 years ago

10.3389/fonc.2021.605810

A Novel Risk Factor Model Based on Glycolysis-Associated Genes for Predicting the Prognosis of Patients With Prostate Cancer
Cited by: 6
Author(s): Kaixuan Guo, Cong Lai, Juan Shi, Zhuang Tang, Cheng Liu, Kuiqing Li, Kailin Xu
Software Mentions: 18
Published: almost 3 years ago

10.1186/s12935-020-01571-7

RETRACTED ARTICLE: Aging-related tumor associated fibroblasts changes could worsen the prognosis of GBM patients
Cited by: 7
Author(s): Hongwang Song, Xiaojun Fu, Chenxing Wu, Shouwei Li
Software Mentions: 16
Published: almost 4 years ago

10.3389/fimmu.2021.557994

Investigation of Genetic Determinants of Glioma Immune Phenotype by Integrative Immunogenomic Scale Analysis
Cited by: 10
Author(s): Binghao Zhao, Yuekun Wang, Yaning Wang, Congxin Dai
Software Mentions: 14
Published: about 3 years ago

10.12688/f1000research.19236.3

Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures
Cited by: 11
Author(s): Dharmesh D. Bhuva, Momeneh Foroutan, Yi Xie, Ruqian Lyu, Joseph Cursons, Melissa J. Davis
Software Mentions: 13
Published: almost 5 years ago

10.3389/fonc.2020.629909

Identification of an Immune Gene-Associated Prognostic Signature and Its Association With a Poor Prognosis in Gastric Cancer Patients
Cited by: 15
Author(s): Xiaoqing Guan, Zhiyuan Xu, Runzhe Chen, Jiang‐Jiang Qin, Xiangdong Cheng
Software Mentions: 13
Published: over 3 years ago

10.3390/cancers11010091

The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis
Cited by: 5
Author(s): Yingbo Zhang, Xiaomin Tang, Yuxin Pang, Luqi Huang, Dan Wang, Chao Yuan, Xuan Hu, Liping Qu
Software Mentions: 13
Published: over 5 years ago

10.3389/fbioe.2020.00101

The Integrated Transcriptome Bioinformatics Analysis Identifies Key Genes and Cellular Components for Spinal Cord Injury-Related Neuropathic Pain
Cited by: 8
Author(s): Runzhi Huang, Tong Meng, Rui Zhu, Lijuan Zhao, Dianwen Song, Huabin Yin, Zongqiang Huang, Liming Cheng, Jie Zhang
Software Mentions: 11
Published: over 4 years ago

10.1155/2020/5858092

Profiles of Immune Infiltration and Prognostic Immunoscore in Lung Adenocarcinoma
Cited by: 9
Author(s): Yanyan Li, Liping Tao, Weiyang Cai
Software Mentions: 10
Published: about 4 years ago

10.3389/fonc.2021.643465

Identification of the Roles of a Stemness Index Based on mRNA Expression in the Prognosis and Metabolic Reprograming of Pancreatic Ductal Adenocarcinoma
Cited by: 6
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 10
Published: over 3 years ago

10.1155/2021/1031906

Development of a Ferroptosis-Related lncRNA Signature to Predict the Prognosis and Immune Landscape of Bladder Cancer
Cited by: 14
Author(s): Ranran Zhou, Jingjing Liang, Haijun Tian, Qi Chen, Cheng Yang, Cundong Liu
Software Mentions: 10
Published: about 3 years ago

10.1126/sciadv.aaz1138

Two different epigenetic information channels in wild three-spined sticklebacks are involved in salinity adaptation
Cited by: 76
Author(s): Melanie J. Heckwolf, Britta Meyer, Robert Häsler, Marc P. Höppner, Christophe Eizaguirre, Thorsten B. H. Reusch
Software Mentions: 9
Published: over 4 years ago

10.1186/s12864-018-5092-0

High-throughput proteomic profiling of the fish liver following bacterial infection
Cited by: 58
Author(s): Dwight R. Causey, Moritz A N Pohl, David Stead, Samuel Martín, Christopher J. Secombes, Daniel J. Macqueen
Software Mentions: 9
Published: almost 6 years ago

10.1186/s12967-021-03065-0

Comprehensive analysis of EMT-related genes and lncRNAs in the prognosis, immunity, and drug treatment of colorectal cancer
Cited by: 28
Author(s): Yang Yang, Mingyang Feng, Liangliang Bai, Wei‐Ting Liao, Kaiyu Zhou, Mengxi Zhang, Qiuji Wu, Feng Wen, Wenhua Lei, Pengfei Zhang, Nan Zhang, Jiaxing Huang, Li Qiu
Software Mentions: 8
Published: almost 3 years ago

10.3389/fonc.2021.706915

A Novel Nine-lncRNA Risk Signature Correlates With Immunotherapy in Hepatocellular Carcinoma
Cited by: 8
Author(s): Ye Nie, Jianhui Li, Wenlong Wu, Dongnan Guo, Xinjun Lei, Tianchen Zhang, Yanfang Wang, Zhenzhen Mao, Xuan Zhang, Wenjie Song
Software Mentions: 8
Published: almost 3 years ago

10.3389/fimmu.2021.711337

Single-Cell RNA Sequencing Identifies New Inflammation-Promoting Cell Subsets in Asian Patients With Chronic Periodontitis
Cited by: 17
Author(s): Shu‐Jiao Qian, Qing-Guo Huang, Ruiying Chen, Jia-Ji Mo, Liyun Zhou, Yi Zhao, Bin Li, Hong-Chang Lai
Software Mentions: 8
Published: almost 3 years ago

10.1155/2021/5555634

Downregulation of ATP6V1A Involved in Alzheimer’s Disease via Synaptic Vesicle Cycle, Phagosome, and Oxidative Phosphorylation
Cited by: 15
Author(s): Zhike Zhou, Jun Bai, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 7
Published: over 3 years ago

10.3389/fmolb.2021.651525

Potential Role of NEU1 in Hepatocellular Carcinoma: A Study Based on Comprehensive Bioinformatical Analysis
Cited by: 5
Author(s): Zhulin Wu, Li He, Lina Yang, Xuehong Fang, Lisheng Peng
Software Mentions: 7
Published: almost 3 years ago

10.3389/fgene.2021.678436

Development of an Immune-Related LncRNA Prognostic Signature for Glioma
Cited by: 8
Author(s): Yudong Cao, Hecheng Zhu, Jun Tan, Yin Wu, Quanwei Zhou, Zhaoqi Xin, Zhaoping Wu, Zhipeng Jiang, Youwei Guo, Yirui Kuang, Can Li, Ming Zhao, Xingjun Jiang, Jian Peng, Chao Ren
Software Mentions: 7
Published: about 3 years ago

10.3389/fgene.2021.732211

A Ferroptosis-Related Prognostic Signature Based on Antitumor Immunity and Tumor Protein p53 Mutation Exploration for Guiding Treatment in Patients With Head and Neck Squamous Cell Carcinoma
Cited by: 13
Author(s): Xin Fan, YangShaobo Ou, Huijie Liu, Liangzhen Zhan, Xiaohui Zhu, Mingyang Cheng, Qun Li, Dongmei Yin, Lan Liao
Software Mentions: 7
Published: almost 3 years ago

10.1186/1471-2164-15-452

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding
Cited by: 52
Author(s): Arun Kommadath, Hua Bao, Adriano S. Arantes, Graham Plastow, Christopher K. Tuggle, Shawn M. D. Bearson, Le Luo Guan, Paul Stothard
Software Mentions: 7
Published: about 10 years ago

10.1002/cam4.3434

The clinical value and potential molecular mechanism of the downregulation of MAOA in hepatocellular carcinoma tissues
Cited by: 20
Author(s): Yu‐Yan Pang, Jian‐Di Li, Gao Li, Xia Yang, Yi‐Wu Dang, Zhiyong Lai, Li‐Min Liu, Jie Yang, Huayu Wu, Rong‐Quan He, Zhi‐Guang Huang, Dandan Xiong, Lihua Yang, Lin Shi, Wei‐Jia Mo, Deng Tang, Huiping Lu, Gang Chen
Software Mentions: 7
Published: almost 4 years ago

10.3389/pore.2021.1609825

Clinical Value of TXNDC12 Combined With IDH and 1p19q as Biomarkers for Prognosis of Glioma
Cited by: 4
Author(s): Xinzhuang Wang, Quan Yang, Nan Liu, Qilong Bian, Ming Gao, Xu Hou
Software Mentions: 7
Published: almost 3 years ago

10.18632/aging.103779

Development and validation of an immune and stromal prognostic signature in uveal melanoma to guide clinical therapy
Cited by: 5
Author(s): Qianwen Gong, Qi Wan, Anqi Li, Yubin Yu, Xiangyu Ding, Lin Leng, Xiao-Liang Qi, Liang Hu
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0242191

EZH2 is a negative prognostic biomarker associated with immunosuppression in hepatocellular carcinoma
Cited by: 20
Author(s): Baoqiang Guo, Xiaohong Tan, Hong Cen
Software Mentions: 7
Published: over 3 years ago

10.3389/fonc.2021.698278

A Focal Adhesion-Related Gene Signature Predicts Prognosis in Glioma and Correlates With Radiation Response and Immune Microenvironment
Cited by: 7
Author(s): Haonan Li, Guohui Wang, Wenyan Wang, Jie Pan, Huandi Zhou, Xuetao Han, Linlin Su, Zhenghui Ma, Liubing Hou, Xiaoying Xue
Software Mentions: 7
Published: almost 3 years ago

10.1371/journal.pone.0187735

Transcriptome profile of lung dendritic cells after in vitro porcine reproductive and respiratory syndrome virus (PRRSV) infection
Cited by: 16
Author(s): Maren Pröll, Christiane Neuhoff, K. Schellander, Muhammad Jasim Uddin, Mehmet Ulaş Çınar, Sudeep Sahadevan, Xuecheng Qu, M. S. Islam, Mikhaël Poirier, Marcel A. Müller, Christian Drosten, Dawit Tesfaye, Ernst Tholen, Christine Große‐Brinkhaus
Software Mentions: 7
Published: over 6 years ago

10.3389/fnmol.2018.00225

NFIX Circular RNA Promotes Glioma Progression by Regulating miR-34a-5p via Notch Signaling Pathway
Cited by: 86
Author(s): Haidong Xu, Yu Zhang, Qi Ling, Lijuan Ding, Hong Jiang, Haojun Yu
Software Mentions: 7
Published: about 6 years ago

10.1155/2021/5552623

Integrative Functional Genomic Analysis of Molecular Signatures and Mechanistic Pathways in the Cell Cycle Underlying Alzheimer’s Disease
Cited by: 5
Author(s): Zhike Zhou, Jun Bai, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: about 3 years ago

10.18632/aging.103994

Molecular identification of protein kinase C beta in Alzheimer's disease
Cited by: 6
Author(s): Zhike Zhou, Fenqin Chen, Shanshan Zhong, Yi Zhou, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Mei Zhao, Chuansheng Zhao
Software Mentions: 6
Published: over 3 years ago

10.1186/1471-2164-10-270

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events
Cited by: 110
Author(s): Sônia Sousa Melo Cavalcanti de Albuquerque, Céline Carret, Ana Rita Grosso, Alice S. Tarun, Xinxia Peng, Stefan H. I. Kappe, Miguel Prudêncio, Maria M. Mota
Software Mentions: 6
Published: about 15 years ago

10.1111/mec.14711

Genome‐wide evidence for divergent selection between populations of a major agricultural pathogen
Cited by: 64
Author(s): Fanny E. Hartmann, Bruce A. McDonald, Daniel Croll
Software Mentions: 6
Published: about 6 years ago

10.18632/aging.202718

TMBIM6, a potential virus target protein identified by integrated multiomics data analysis in SARS-CoV-2-infected host cells
Cited by: 4
Author(s): Qizheng Han, Junhao Wang, Haihua Luo, Lei Li, Xinya Lu, Aihua Liu, Yongqiang Deng, Yong Jiang
Software Mentions: 6
Published: over 3 years ago

10.1186/s12918-018-0620-8

Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin
Cited by: 11
Author(s): Theresia Conrad, Olaf Kniemeyer, Sebastian Henkel, Thomas Krüger, Derek J. Mattern, Vito Valiante, Reinhard Guthke, Ilse D. Jacobsen, Axel A. Brakhage, Sebastian Vlaic, Jörg Linde
Software Mentions: 6
Published: almost 6 years ago

10.7554/eLife.02535

High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species
Cited by: 111
Author(s): Molly Schumer, Rongfeng Cui, Daniel L. Powell, Rebecca Dresner, Gil G. Rosenthal, Peter Andolfatto
Software Mentions: 6
Published: about 10 years ago

10.1155/2021/6347592

Macrophages M1-Related Prognostic Signature in Hepatocellular Carcinoma
Cited by: 2
Author(s): Hao Zhang, Lin Sun, Xiao Hu
Software Mentions: 6
Published: almost 3 years ago

10.18632/aging.202603

Functional analysis of brain derived neurotrophic factor (BDNF) in Huntington’s disease
Cited by: 6
Author(s): Zhike Zhou, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.01300

A Prognostic Nomogram Combining Immune-Related Gene Signature and Clinical Factors Predicts Survival in Patients With Lung Adenocarcinoma
Cited by: 50
Author(s): Congkuan Song, Zixin Guo, Donghu Yu, Yujin Wang, Qingwen Wang, Zhe Dong, Weidong Hu
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0171413

Large-scale bioactivity analysis of the small-molecule assayed proteome
Cited by: 4
Author(s): Tyler W. H. Backman, Daniel S. Evans, Thomas Girke
Software Mentions: 5
Published: over 7 years ago

10.3389/fcell.2021.634697

A Combined Two-mRNA Signature Associated With PD-L1 and Tumor Mutational Burden for Prognosis of Lung Adenocarcinoma
Cited by: 12
Author(s): Congkuan Song, Zhi‐Quan Wu, Qingwen Wang, Yujin Wang, Zixin Guo, Sheng Li, Weidong Hu
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0041066

Transcriptional Response of Peripheral Blood Mononuclear Cells from Cattle Infected with Mycobacterium bovis
Cited by: 25
Author(s): Federico Carlos Blanco, Marcelo Soria, María Verónica Bianco, Fabiana Bigi
Software Mentions: 5
Published: about 12 years ago

10.3390/cancers12103054

A Methylation-Based Reclassification of Bladder Cancer Based on Immune Cell Genes
Cited by: 26
Author(s): Qizhan Luo, Thomas-Alexander Vögeli
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2020.00360

Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants
Cited by: 16
Author(s): Maria Petronella Human, David Kenneth Berger, Bridget Genevieve Crampton
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.696878

Classification of Osteosarcoma Based on Immunogenomic Profiling
Cited by: 14
Author(s): Xinwen Wang, Liangming Wang, Weifeng Xu, Xinwu Wang, Dianshan Ke, Jiumao Lin, Wanzun Lin, Xiaochun Bai
Software Mentions: 5
Published: about 3 years ago

10.1002/ece3.6422

Evidence of capacitation in the parasitoid wasp, Nasonia vitripennis, and its potential role in sex allocation
Cited by: 0
Author(s): Alun R. C. Jones, Eamonn B. Mallon
Software Mentions: 5
Published: about 4 years ago

10.1007/s00394-016-1230-0

Cocoa polyphenols and fiber modify colonic gene expression in rats
Cited by: 14
Author(s): Malén Massot-Cladera, Àngels Franch, Margarida Castell, Francisco J. Pérez-Cano
Software Mentions: 5
Published: about 8 years ago

10.3390/biomedicines9020215

Reclassification of Kidney Clear Cell Carcinoma Based on Immune Cell Gene-Related DNA CpG Pairs
Cited by: 1
Author(s): Qizhan Luo, Thomas-Alexander Vögeli
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-08114-x

PTEN loss correlates with T cell exclusion across human cancers
Cited by: 31
Author(s): Ziying Lin, Lixia Huang, Shao Li Li, Jincui Gu, Xiaoxian Cui, Yunyun Zhou
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-020-6694-x

Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing
Cited by: 22
Author(s): Diego Robledo, Alastair Hamilton, Alejandro P. Gutiérrez, James E. Bron, Ross D. Houston
Software Mentions: 4
Published: over 4 years ago

10.1002/advs.202003504

Cytosolic Delivery of Thiolated Neoantigen Nano‐Vaccine Combined with Immune Checkpoint Blockade to Boost Anti‐Cancer T Cell Immunity
Cited by: 28
Author(s): Da Zhang, Zongming Lin, Ming Wu, Zhixiong Cai, Youshi Zheng, Lei He, Zhenli Li, Jie Zhou, Liqin Sun, Geng Chen, Yongyi Zeng, Juan Li, Jingfeng Liu, Huanghao Yang, Xiaolong Liu
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1009373

Genetic dissection of complex traits using hierarchical biological knowledge
Cited by: 1
Author(s): Hidenori Tanaka, Jason F. Kreisberg, Trey Ideker
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0228503

Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity
Cited by: 33
Author(s): Marietta Herrmann, Anne Babler, Irina Moshkova, Felix Gremse, Fabian Kießling, Ulrike Kusebauch, Valentin Nelea, Rafael Kramann, Robert L. Moritz, Marc D. McKee, Willi Jahnen‐Dechent
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0127103

From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal Response
Cited by: 31
Author(s): Barbara Blasi, Hakim Tafer, Donatella Tesei, Katja Sterflinger
Software Mentions: 4
Published: about 9 years ago

10.12688/f1000research.16005.3

MSF: Modulated Sub-graph Finder
Cited by: 0
Author(s): Mariam R. Farman, Ivo L. Hofacker, Fabian Amman
Software Mentions: 4
Published: over 5 years ago

10.1002/2211-5463.13130

<i>CCR7</i> and its related molecules may be potential biomarkers of pulmonary arterial hypertension
Cited by: 5
Author(s): Mengsi Cai, Xiuchun Li, Haoru Dong, Ying Wang, Xiaoying Huang
Software Mentions: 4
Published: about 3 years ago

10.1002/2211-5463.12747

Prediction of a miRNA‐mRNA functional synergistic network for cervical squamous cell carcinoma
Cited by: 5
Author(s): Dan Sun, Lu Han, Rui Cao, Huali Wang, Jiyong Jiang, Yue Deng, Xiaohui Yu
Software Mentions: 4
Published: over 4 years ago

10.1038/s41396-020-00859-w

Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments
Cited by: 18
Author(s): Anik Dutta, Fanny E. Hartmann, C. L. Francisco, Bruce A. McDonald, Daniel Croll
Software Mentions: 4
Published: over 3 years ago

10.1111/jcmm.16181

Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
Cited by: 32
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1002838

PERT: A Method for Expression Deconvolution of Human Blood Samples from Varied Microenvironmental and Developmental Conditions
Cited by: 107
Author(s): Wenlian Qiao, Gerald Quon, Elizabeth Csaszar, Mei Yu, Quaid Morris, Peter W. Zandstra
Software Mentions: 3
Published: over 11 years ago

10.1038/s41419-021-04107-7

PPFIBP1 induces glioma cell migration and invasion through FAK/Src/JNK signaling pathway
Cited by: 16
Author(s): Caihua Dong, Xinying Li, Yang Jiao, Detian Yuan, Yuanshuai Zhou, Yina Zhang, Guohua Shi, Ruobing Zhang, Jianping Liu, Peng Fu, Minxuan Sun
Software Mentions: 3
Published: almost 3 years ago

10.3389/fimmu.2021.717505

Follistatin-Like 3 Correlates With Lymph Node Metastasis and Serves as a Biomarker of Extracellular Matrix Remodeling in Colorectal Cancer
Cited by: 17
Author(s): Chao Yang, Fang Cao, Shuoyang Huang, Yongbin Zheng
Software Mentions: 3
Published: about 3 years ago

10.18632/oncotarget.20083

Reduced expression of BMP3 contributes to the development of pulmonary fibrosis and predicts the unfavorable prognosis in IIP patients
Cited by: 8
Author(s): Xiaoting Yu, Pan Gu, Ziling Huang, Fang Xia, Ying Jiang, Qun Luo, Xia Li, Xuyou Zhu, Mengna Zhan, Junbang Wang, Lu Fan, Rongchang Chen, Juehua Yu, Yingying Gu, Aibin Liang, Xianghua Yi
Software Mentions: 3
Published: almost 7 years ago

10.1093/jxb/erz564

The GATA transcription factor GNC plays an important role in photosynthesis and growth in poplar
Cited by: 59
Author(s): Yi An, Yangyan Zhou, Xiao Han, Chao Shen, Shu Wang, Chao Liu, Weilun Yin, Xinli Xia
Software Mentions: 2
Published: over 4 years ago

10.3389/fendo.2021.745984

Glucose Metabolism Disorder Induces Spermatogenic Dysfunction in Northern Pig-Tailed Macaques (Macaca leonina) With Long-Term SIVmac239 Infection
Cited by: 0
Author(s): Tian-Zhang Song, Mingxu Zhang, Han-Dan Zhang, Xuehui Wang, Wei Pang, Ren‐Rong Tian, Yong‐Tang Zheng
Software Mentions: 2
Published: almost 3 years ago

10.3389/fmolb.2021.597513

Mining the Selective Remodeling of DNA Methylation in Promoter Regions to Identify Robust Gene-Level Associations With Phenotype
Cited by: 4
Author(s): Quan Yuan, Feng Liang, Simin Deng, Yuexing Zhu, Ying Chen, Jianghui Xiong
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.202594

Artificial intelligence prediction model for overall survival of clear cell renal cell carcinoma based on a 21-gene molecular prognostic score system
Cited by: 6
Author(s): Qiliang Peng, Yi Shen, Kai Fu, Zheng Dai, Lü Jin, Dian Yang, Jin Zhu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12866-015-0532-3

Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A
Cited by: 45
Author(s): Jennifer M. H. Geddes, Daniel Croll, Mélissa Caza, Nikolay Stoynov, Leonard J. Foster, James W. Kronstad
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2334-10-10

Modulation of hepatic PPAR expression during Ft LVS LPS-induced protection from Francisella tularensis LVS infection
Cited by: 8
Author(s): Saroj Kant Mohapatra, Leah E. Cole, Clive Evans, Bruno W. S. Sobral, Josep Bassaganya‐Riera, Raquel Hontecillas, Stefanie N. Vogel, Oswald Crasta
Software Mentions: 2
Published: over 14 years ago

10.1111/acel.12386

Integration of ‘omics’ data in aging research: from biomarkers to systems biology
Cited by: 94
Author(s): Jonas Zierer, Cristina Menni, Gabi Kastenmüller, Tim D. Spector
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep22388

Pharmacoproteomic analysis reveals that metapristone (RU486 metabolite) intervenes E-cadherin and vimentin to realize cancer metastasis chemoprevention
Cited by: 24
Author(s): Shasha Yu, Cuicui Yan, Xiaojing Yang, Sudang He, Jian Liu, Chongtao Qin, Chuanbing Huang, Yusheng Lu, Zhaobing Tian, Jia Lee
Software Mentions: 1
Published: over 8 years ago

10.1155/2020/8866048

D-Mannose Inhibits Adipogenic Differentiation of Adipose Tissue-Derived Stem Cells via the miR669b/MAPK Pathway
Cited by: 3
Author(s): Yitong Liu, Lijia Guo, Lei Hu, Chen Xie, Jingfei Fu, Yiyang Jiang, Nannan Han, Jia Liang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0159498

An Encapsulation of Gene Signatures for Hepatocellular Carcinoma, MicroRNA-132 Predicted Target Genes and the Corresponding Overlaps
Cited by: 24
Author(s): Daniel Xin Zhang, Wei Tang, Gang Chen, Fanghui Ren, Hai‐Wei Liang, Yi‐Wu Dang, Minhua Rong
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-021-07800-1

Fusarium head blight resistance in European winter wheat: insights from genome-wide transcriptome analysis
Cited by: 15
Author(s): Maria Buerstmayr, Christian Wagner, Tetyana Nosenko, Jimmy Omony, Barbara Steiner, Thomas Nußbaumer, Klaus Mayer, Hermann Buerstmayr
Software Mentions: 1
Published: about 3 years ago

10.3892/mmr.2014.2580

Proteome changes in mesenteric lymph induced by sepsis
Cited by: 10
Author(s): Ping Zhang, Yan Li, Lian‐Dong Zhang, Liang‐Hua Wang, Xi Wang, Chao He, Lin Zhou
Software Mentions: 1
Published: almost 10 years ago

10.1097/MD.0000000000018493

Bioinformatic analysis of the molecular mechanism underlying bronchial pulmonary dysplasia using a text mining approach
Cited by: 3
Author(s): Weitao Zhou, Fei Shao, Jing Li
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0024419

Phospholipase C Isozymes Are Deregulated in Colorectal Cancer – Insights Gained from Gene Set Enrichment Analysis of the Transcriptome
Cited by: 56
Author(s): Stine A. Danielsen, Lina Cekaite, Trude H. Ågesen, Anita Sveen, Arild Nesbakken, Espen Thiis‐Evensen, Rolf Inge Skotheim, Guro Elisabeth Lind, Ragnhild Lothe
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12964-020-00604-y

FBXL6 governs c-MYC to promote hepatocellular carcinoma through ubiquitination and stabilization of HSP90AA1
Cited by: 33
Author(s): Weidong Shi, Long-Hai Feng, Shu Dong, Zhouyu Ning, Yi-Jun Hua, Luming Liu, Zheng Chen, Zhiqiang Meng
Software Mentions: 1
Published: about 4 years ago

10.1155/2015/615825

Systematic Analysis of Endometrial Cancer-Associated Hub Proteins Based on Text Mining
Cited by: 7
Author(s): Hengmiao Gao, Zhenyu Zhang
Software Mentions: 1
Published: over 9 years ago

Projects: bioconductor: GSEABase

Papers Mentioning GSEABase 79