Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fbioe.2020.00101

https://doi.org/10.3389/fbioe.2020.00101

Cited by: 8
Author(s): Runzhi Huang, Tong Meng, Rui Zhu, Lijuan Zhao, Dianwen Song, Huabin Yin, Zongqiang Huang, Liming Cheng, Jie Zhang
Published: about 4 years ago

Software Mentions 11

bioconductor: ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962

bioconductor: clusterProfiler

A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223

bioconductor: GSEABase

Gene set enrichment data structures and methods
Papers that mentioned: 79

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: SingleR

Reference-Based Single-Cell RNA-Seq Annotation
Papers that mentioned: 97

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: reticulate

Interface to 'Python'
Papers that mentioned: 10

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: CellPhoneDB

Inferring cell-cell communication.
Papers that mentioned: 89

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893