Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fonc.2021.643465

https://doi.org/10.3389/fonc.2021.643465

Cited by: 6
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Published: about 3 years ago

Software Mentions 10

bioconductor: clusterProfiler

A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223

bioconductor: enrichplot

Visualization of Functional Enrichment Result
Papers that mentioned: 249

bioconductor: GSEABase

Gene set enrichment data structures and methods
Papers that mentioned: 79

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: maftools

Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: plot

A matplotlib frontend executable using JSON file as user input
Papers that mentioned: 63