Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0187735

https://doi.org/10.1371/journal.pone.0187735

Transcriptome profile of lung dendritic cells after in vitro porcine reproductive and respiratory syndrome virus (PRRSV) infection

Cited by: 16
Author(s): Maren Pröll, Christiane Neuhoff, K. Schellander, Muhammad Jasim Uddin, Mehmet Ulaş Çınar, Sudeep Sahadevan, Xuecheng Qu, M. S. Islam, Mikhaël Poirier, Marcel A. Müller, Christian Drosten, Dawit Tesfaye, Ernst Tholen, Christine Große‐Brinkhaus
Published: about 7 years ago

Software Mentions 7

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: GSEABase
Gene set enrichment data structures and methods
Papers that mentioned: 79
cran: mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
Papers that mentioned: 297
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017