Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/cancers11010091

https://doi.org/10.3390/cancers11010091

Cited by: 5
Author(s): Yingbo Zhang, Xiaomin Tang, Yuxin Pang, Luqi Huang, Dan Wang, Chao Yuan, Xuan Hu, Liping Qu
Published: over 5 years ago

Software Mentions 13

bioconductor: affy

Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989

bioconductor: Biobase

Biobase: Base functions for Bioconductor
Papers that mentioned: 104

bioconductor: gcrma

Background Adjustment Using Sequence Information
Papers that mentioned: 186

bioconductor: genefilter

genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142

bioconductor: GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328

bioconductor: GSEABase

Gene set enrichment data structures and methods
Papers that mentioned: 79

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: ggpubr

'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893