Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.18632/oncotarget.22928

https://doi.org/10.18632/oncotarget.22928

Comparing the genomes of cutaneous melanoma tumors to commercially available cell lines

Cited by: 10
Author(s): Stephen A. Luebker, Weiwei Zhang, Scott A. Koepsell
Published: almost 7 years ago

Software Mentions 11

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Papers that mentioned: 21
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: cometExactTest
Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
Papers that mentioned: 2
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggsignif
Significance Brackets for 'ggplot2'
Papers that mentioned: 64
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421