Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.celrep.2019.11.077

https://doi.org/10.1016/j.celrep.2019.11.077

Integrated Epigenome, Exome, and Transcriptome Analyses Reveal Molecular Subtypes and Homeotic Transformation in Uterine Fibroids

Cited by: 42
Author(s): Jitu W. George, Huihui Fan, Benjamin K. Johnson, Tyler J. Carpenter, Kelly K. Foy, Anindita Chatterjee, Amanda L. Patterson, Julie Koeman, Marie Adams, Zachary Madaj, David Chesla, Erica E. Marsh, Timothy J. Triche, Hui Shen, Jose Teixeira
Published: almost 5 years ago

Software Mentions 9

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: gemini
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens
Papers that mentioned: 7
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
bioconductor: SomaticSignatures
Somatic Signatures
Papers that mentioned: 32
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: gemini
A database framework for exploring genetic variation
Papers that mentioned: 7
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: vt
VirusTotal Full API
Papers that mentioned: 24