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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.3390/ijms20225621

https://doi.org/10.3390/ijms20225621

APOBEC3-Mediated RNA Editing in Breast Cancer is Associated with Heightened Immune Activity and Improved Survival

Cited by: 45
Author(s): Mariko Asaoka, Takashi Ishikawa, Kazuaki Takabe, Santosh K. Patnaik
Published: over 5 years ago

Software Mentions 11

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
Very Likely Science (100)
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: survival
Survival Analysis
Papers that mentioned: 1,690
Very Likely Science (100)
pypi: awk
A library to provide advanced awk-like functionalities for file manipulation in Python.
Papers that mentioned: 80
Very Likely Science (65)
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
Very Likely Science (100)
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
Very Likely Science (65)
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690
Very Likely Science (90)