Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms20225621

https://doi.org/10.3390/ijms20225621

APOBEC3-Mediated RNA Editing in Breast Cancer is Associated with Heightened Immune Activity and Improved Survival

Cited by: 45
Author(s): Mariko Asaoka, Takashi Ishikawa, Kazuaki Takabe, Santosh K. Patnaik
Published: almost 5 years ago

Software Mentions 11

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: maftools

Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288

bioconductor: TCGAbiolinks

TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: survival

Survival Analysis
Papers that mentioned: 1,690

pypi: awk

A library to provide advanced awk-like functionalities for file manipulation in Python.
Papers that mentioned: 80

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071

pypi: survival

Add static script_dir() method to Path
Papers that mentioned: 1,690