Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.xcrm.2020.100128

https://doi.org/10.1016/j.xcrm.2020.100128

Cited by: 32
Author(s): Derek J. Essegian, Rimpi Khurana, Vasileios Stathias, Stephan C. Schürer
Published: over 3 years ago

Software Mentions 21

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690