Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: survcomp

https://packages.ecosyste.ms/registries/bioconductor.org/packages/survcomp

Performance Assessment and Comparison for Survival Analysis
1 version
Latest release: about 1 year ago
4 dependent packages
113,672 downloads total

Papers Mentioning survcomp 117

10.3389/fimmu.2021.659444
Development and Validation of a CD8+ T Cell Infiltration-Related Signature for Melanoma Patients
Cited by: 13
Author(s): Yuan Yuan, Zheng Zhu, Ying Lan, Saili Duan, Zijue Zhu, Xi Zhang, Guoyin Li, Hui Qü, Yao Feng, Hui Cai, Zewen Song
Software Mentions: 24
Published: over 3 years ago
10.3389/fpls.2017.00623
A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R
Cited by: 25
Author(s): Niklas Schandry
Software Mentions: 21
Published: over 7 years ago
10.3389/fonc.2021.690129
A Tumor Progression Related 7-Gene Signature Indicates Prognosis and Tumor Immune Characteristics of Gastric Cancer
Cited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Software Mentions: 16
Published: over 3 years ago
10.1186/s12967-021-02952-w
Molecular subtype identification and prognosis stratification by a metabolism-related gene expression signature in colorectal cancer
Cited by: 20
Author(s): Daowei Lin, Wenhua Fan, Rongxin Zhang, Enen Zhao, Pansong Li, Wenhao Zhou, Jianhong Peng, Liren Li
Software Mentions: 14
Published: over 3 years ago
10.18632/aging.202976
Development and validation of epithelial mesenchymal transition-related prognostic model for hepatocellular carcinoma
Cited by: 7
Author(s): Xuequan Wang, Ziming Xing, Huihui Xu, Haihua Yang, Tongjing Xing
Software Mentions: 13
Published: over 3 years ago
10.3389/fcell.2021.676485
The Pyroptosis-Related Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Gastric Cancer
Cited by: 116
Author(s): Wei Shao, Zongcheng Yang, Yue Fu, Lixin Zheng, Fen Liu, Li Chai, Jihui Jia
Software Mentions: 10
Published: over 3 years ago
10.1186/s13059-016-0999-8
Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia
Cited by: 64
Author(s): Syed Haider, Alan McIntyre, Ruud G.P.M. van Stiphout, Laura Winchester, Simon Wigfield, Adrian L. Harris, Francesca M. Buffa
Software Mentions: 10
Published: over 8 years ago
10.1186/s13550-021-00809-3
Preselection of robust radiomic features does not improve outcome modelling in non-small cell lung cancer based on clinical routine FDG-PET imaging
Cited by: 7
Author(s): Carol Oliveira, Florian Amstutz, Diem Vuong, Marta Bogowicz, Martin Hüllner, R. E. Forster, Lucas Basler, Christina Schröder, Eric Innocents Eboulet, Miklos Pless, Sandra Thierstein, Solange Peters, Sven Hillinger, Stephanie Tanadini‐Lang, Matthias Gückenberger
Software Mentions: 9
Published: over 3 years ago
10.3389/fonc.2020.578895
Radiomics Feature Activation Maps as a New Tool for Signature Interpretability
Cited by: 17
Author(s): Diem Vuong, Stephanie Tanadini‐Lang, Ze Wu, Robert J. Marks, Jan Unkelbach, Sven Hillinger, Eric Innocents Eboulet, Sandra Thierstein, Solange Peters, Miklos Pless, Matthias Gückenberger, Marta Bogowicz
Software Mentions: 9
Published: almost 4 years ago
10.3390/cancers13040722
Prognostic and Predictive Value of Integrated Qualitative and Quantitative Magnetic Resonance Imaging Analysis in Glioblastoma
Cited by: 19
Author(s): Maikel Verduin, Sergey Primakov, Inge Compter, Henry C. Woodruff, Sander M. J. van Kuijk, Bram Ramaekers, Maarten te Dorsthorst, Elles G. M. Revenich, Mark ter Laan, Sjoert Pegge, Frederick J. A. Meijer, Jan Beckervordersandforth, Ernst-Jan M. Speel, Benno Küsters, Wendy W.J. de Leng, Monique M. Anten, Martijn P. G. Broen, Linda Ackermans, Olaf Schijns, Onno P.M. Teernstra, Koos E. Hovinga, Marc Vooijs, Vivianne C. G. Tjan‐Heijnen, Daniëlle Eekers, Alida A. Postma, Ann Hoeben
Software Mentions: 9
Published: almost 4 years ago
10.3390/cancers13040917
Novel Gene Signatures Predictive of Patient Recurrence-Free Survival and Castration Resistance in Prostate Cancer
Cited by: 18
Author(s): Jun Ai, Baotong Zhang, Zhiqian Zhang, Hailiang Hu, Jiangtao Dong
Software Mentions: 9
Published: almost 4 years ago
10.3389/fonc.2020.01716
A Prognostic Prediction Model Developed Based on Four CpG Sites and Weighted Correlation Network Analysis Identified DNAJB1 as a Novel Biomarker for Pancreatic Cancer
Cited by: 13
Author(s): Lingming Kong, Peng Liu, Xiang Fei, Tianyu Wu, Zhongpeng Wang, Baohui Zhang, Jiatong Li, Xiaodong Tan
Software Mentions: 8
Published: about 4 years ago
10.1017/S0950268820000758
Development and external-validation of a nomogram for predicting the survival of hospitalised HIV/AIDS patients based on a large study cohort in western China
Cited by: 5
Author(s): Zongxiang Yuan, Bo Zhou, Sirun Meng, Jie Jiang, Shenghong Huang, Xiang Lu, Nianning Wu, Zhongkui Xie, Jianning Deng, X. Chen, J. Liu, J. Zhang, Fengyao Wu, Hao Liang, L. Ye
Software Mentions: 8
Published: almost 5 years ago
10.1186/s12967-020-02387-9
A prognostic nomogram integrating novel biomarkers identified by machine learning for cervical squamous cell carcinoma
Cited by: 7
Author(s): Yimin Li, Shun Lü, Mei Lan, Xinhao Peng, Zijian Zhang, Jinyi Lang
Software Mentions: 8
Published: over 4 years ago
10.18632/oncotarget.16961
RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature
Cited by: 24
Author(s): Ryne C. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, Laura Palacio, David S. Gunther, R Myers, Sara J. Cooper
Software Mentions: 8
Published: over 7 years ago
10.3389/fcell.2020.576996
Development and Validation of a Novel DNA Methylation-Driven Gene Based Molecular Classification and Predictive Model for Overall Survival and Immunotherapy Response in Patients With Glioblastoma: A Multiomic Analysis
Cited by: 9
Author(s): Zihao Wang, Lu Gao, Xiaopeng Guo, Wei Lian, Kan Deng, Bing Xing
Software Mentions: 7
Published: about 4 years ago
10.7150/jca.53831
Development and Validation of an Immune-Related Long Non-coding RNA Prognostic Model in Glioma
Cited by: 5
Author(s): Xiaowei Qiu, Yuan Tian, Jingnan Xu, Xin Jiang, Zeyu Liu, Xuewei Qi, Xin Chang, Jianxin Zhao, Jinchang Huang
Software Mentions: 7
Published: almost 4 years ago
10.18632/aging.103949
Analysis of DNA methylation-driven genes for predicting the prognosis of patients with colorectal cancer
Cited by: 3
Author(s): Boshi Fu, Du Cheng, Zhuona Wu, Mingwei Li, Yi Zhao, Xinli Liu, Huizhe Wu, Minjie Wei
Software Mentions: 7
Published: about 4 years ago
10.3389/fmolb.2020.611626
Identification of a Five-Autophagy-Related-lncRNA Signature as a Novel Prognostic Biomarker for Hepatocellular Carcinoma
Cited by: 30
Author(s): Xiaoyu Deng, Qinghua Bi, Shihan Chen, Xianhua Chen, Shuhui Li, Zhaoyang Zhong, Guo Wei, Xiaohui Li, Youcai Deng, Yang Yao
Software Mentions: 7
Published: almost 4 years ago
10.3389/fgene.2021.635863
Identification and Validation of a Novel DNA Damage and DNA Repair Related Genes Based Signature for Colon Cancer Prognosis
Cited by: 16
Author(s): Xuequan Wang, Shiwen Xu, Wei Wang, Shang Guo Piao, Xin-Li Mao, Xian-Bin Zhou, Yi Wang, Weidan Wu, Liping Ye, Shaowei Li
Software Mentions: 7
Published: over 3 years ago
10.1155/2021/6676537
Machine Learning for Building Immune Genetic Model in Hepatocellular Carcinoma Patients
Cited by: 2
Author(s): Jun Liu, Zheng Chen, Wenli Li
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0192859
18F-fluorodeoxyglucose positron-emission tomography (FDG-PET)-Radiomics of metastatic lymph nodes and primary tumor in non-small cell lung cancer (NSCLC) – A prospective externally validated study
Cited by: 54
Author(s): Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Janita E. van Timmeren, Cary Oberije, Wouter van Elmpt, Lioe-Fee de Geus-Oei, Johan Bussink
Software Mentions: 6
Published: over 6 years ago
10.18632/aging.103626
A novel hypoxic tumor microenvironment signature for predicting the survival, progression, immune responsiveness and chemoresistance of glioblastoma: a multi-omic study
Cited by: 6
Author(s): Zihao Wang, Lu Gao, Xiaopeng Guo, Yaning Wang, Yu Wang, Wenbin Ma, Yi Guo, Bing Xing
Software Mentions: 6
Published: about 4 years ago
10.18632/aging.103695
Glioblastoma cell differentiation trajectory predicts the immunotherapy response and overall survival of patients
Cited by: 26
Author(s): Zihao Wang, Xiaopeng Guo, Lu Gao, Yu Wang, Wenbin Ma, Bing Xing
Software Mentions: 6
Published: about 4 years ago
10.18632/aging.202474
Clinical and genomic characteristics of metabolic syndrome in colorectal cancer
Cited by: 2
Author(s): Yanyan Li, Jungang Zhao, Xiaoli Wu, Yini Zhang, Jia Yin, Weiyang Cai
Software Mentions: 6
Published: almost 4 years ago
10.1038/s42003-019-0572-6
pathCHEMO, a generalizable computational framework uncovers molecular pathways of chemoresistance in lung adenocarcinoma
Cited by: 7
Author(s): Nusrat J Epsi, Sukanya Panja, Sharon R. Pine, Antonina Mitrofanova
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pone.0217536
Challenges and caveats of a multi-center retrospective radiomics study: an example of early treatment response assessment for NSCLC patients using FDG-PET/CT radiomics
Cited by: 30
Author(s): Janita E. van Timmeren, Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Wouter van Elmpt, Dirk De Ruysscher, Jean-Pierre Muratet, Fabrice Denis, T. Schimek-Jasch, Ursula Nestle, Arthur Jochems, Henry C. Woodruff, Cary Oberije, Philippe Lambin
Software Mentions: 6
Published: over 5 years ago
10.1111/acel.12740
Comparative transcriptomics across 14<i>Drosophila</i>species reveals signatures of longevity
Cited by: 33
Author(s): Siming Ma, Andrei Avanesov, Emily Porter, Byeong Cheol Lee, Marco Mariotti, Nadezhda Zemskaya, Roderic Guigó, Alexey Moskalev, Vadim N. Gladyshev
Software Mentions: 6
Published: over 6 years ago
10.1186/s12885-020-06741-4
A novel risk score model based on eight genes and a nomogram for predicting overall survival of patients with osteosarcoma
Cited by: 30
Author(s): Guangzhi Wu, Minglei Zhang
Software Mentions: 6
Published: over 4 years ago
10.7150/jca.33345
Radiomic Nomogram: Pretreatment Evaluation of Local Recurrence in Nasopharyngeal Carcinoma based on MR Imaging
Cited by: 37
Author(s): Lu Zhang, Hongyu Zhou, Dongsheng Gu, Jie Tian, Bin Zhang, Di Dong, Xiaokai Mo, Jing Liu, Xiaoning Luo, Shufang Pei, Yang Dong, Wenhui Huang, Qiuyin Chen, Changhong Liang, Lian Zhou, Shuixing Zhang
Software Mentions: 6
Published: almost 6 years ago
10.1186/s12935-020-01635-8
A multi-parametric prognostic model based on clinical features and serological markers predicts overall survival in non-small cell lung cancer patients with chronic hepatitis B viral infection
Cited by: 4
Author(s): Shulin Chen, Hanqing Huang, Yijun Liu, Changchun Lai, Songguo Peng, Lei Zhou, Hao Chen, Yi‐Wei Xu, Xia He
Software Mentions: 6
Published: about 4 years ago
10.1186/s12967-019-1879-2
Clinico-pathological associations and concomitant mutations of the RAS/RAF pathway in metastatic colorectal cancer
Cited by: 11
Author(s): Edoardo Isnaldi, Anna Garuti, Gabriella Cirmena, Stefano Scabini, Edoardo Rimini, Lorenzo Ferrando, Michela Lia, Roberto Murialdo, Lucia Tixi, Enrico Carminati, Andrea Panaro, M. Gallo, Federica Grillo, Luca Mastracci, Lazzaro Repetto, Roberto Fiocca, Emanuele Romairone, Gabriele Zoppoli, Alberto Ballestrero
Software Mentions: 5
Published: over 5 years ago
10.3389/fonc.2021.613668
Development and Validation of a Radiomic Nomogram for Predicting the Prognosis of Kidney Renal Clear Cell Carcinoma
Cited by: 6
Author(s): Ruizhi Gao, Hui Qin, Peng Lin, Chenjun Ma, Chengyang Li, Rong Wen, Jing Huang, Da Wan, Dong‐Yue Wen, Yi-Qiong Liang, Jian Huang, Xin Li, Xinrong Wang, Gang Chen, Yun He, Hong Yang
Software Mentions: 5
Published: over 3 years ago
10.3389/fcvm.2021.717114
Long-Term Clinical Outcomes in Patients With an Acute ST-Segment-Elevation Myocardial Infarction Stratified by Angiography-Derived Index of Microcirculatory Resistance
Cited by: 21
Author(s): Rafail A. Kotronias, Dimitrios Terentes‐Printzios, Mayooran Shanmuganathan, Federico Marin, Roberto Scarsini, James Bradley-Watson, Jeremy P. Langrish, Andrew J. Lucking, Robin P. Choudhury, Rajesh Kharbanda, Héctor M. García‐García, Keith M. Channon, Giovanni Luigi De Maria
Software Mentions: 5
Published: about 3 years ago
10.1186/bcr3116
Gene expression profiling of primary male breast cancers reveals two unique subgroups and identifies N-acetyltransferase-1 (NAT1) as a novel prognostic biomarker
Cited by: 102
Author(s): Ida Johansson, Cecilia Nilsson, Pontus Berglund, Martin Lauss, Markus Ringnér, Håkan Olsson, Lena Luts, Edith Sim, Sten Thorstensson, Marie-Louise Fjällskog, Ingrid Hedenfalk
Software Mentions: 5
Published: almost 13 years ago
10.3389/fonc.2021.664346
Total Lesion Glycolysis Estimated by a Radiomics Model From CT Image Alone
Cited by: 1
Author(s): Hongwei Si, Xinzhong Hao, Lianyu Zhang, Xin Xu, Jianzhong Cao, Ping Wu, Li Li, Zhiyong Wu, Shengyang Zhang, Sijin Li
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.700062
Identification of a Hypoxia-Related Molecular Classification and Hypoxic Tumor Microenvironment Signature for Predicting the Prognosis of Patients with Triple-Negative Breast Cancer
Cited by: 16
Author(s): Xiaoli Sun, Huan Luo, Chen Han, Yu Zhang, Cunli Yan
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.664415
Accurate Prediction of Prognosis by Integrating Clinical and Molecular Characteristics in Colon Cancer
Cited by: 4
Author(s): Liru Wang, Mu Chun Su, Mengyan Zhang, Hongyan Zhao, Hongli Wang, Jie Xing, Chang-Jun Guo, Dianshuang Zhou, Wenhui Xue, Haibo Lu, Yan Zhang
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.719011
Development and Validation of a Prognostic Autophagy-Related Gene Pair Index Related to Tumor-Infiltrating Lymphocytes in Early-Stage Lung Adenocarcinoma
Cited by: 2
Author(s): Zi-Hao Wang, Yu Liu, Pei Zhang, Xuenan Xuan, Xiao-Shan Wei, Yulan Niu, Linlin Ye, Wen-Bei Peng, Siyu Zhang, Qianqian Xue, Qiong Zhou
Software Mentions: 5
Published: about 3 years ago
10.1155/2021/8895723
Identification and Construction of a Long Noncoding RNA Prognostic Risk Model for Stomach Adenocarcinoma Patients
Cited by: 14
Author(s): Zhiqiang Zha, Peiling Zhang, Dailing Li, Guolong Liu, Lin Lü
Software Mentions: 5
Published: over 3 years ago
10.18632/oncotarget.24907
Racial differences in endometrial cancer molecular portraits in The Cancer Genome Atlas
Cited by: 34
Author(s): David S. Guttery, Kevin Blighe, Konstantinos Polymeros, R. Paul Symonds, Salvador Macip, Esther L. Moss
Software Mentions: 5
Published: over 6 years ago
10.1002/1878-0261.12312
<i>N</i> ‐glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients: association with tumor biology and clinical outcome
Cited by: 21
Author(s): Thilde Terkelsen, Vilde Drageset Haakensen, Radka Saldova, Pavel Gromov, Morten Hansen, Henning Stöckmann, Ole Christian Lingjærde, Anne‐Lise Børresen‐Dale, Elena Papaleo, Åslaug Helland, Pauline M. Rudd, Irina Gromova
Software Mentions: 4
Published: over 6 years ago
10.1186/s12918-016-0315-y
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes
Cited by: 8
Author(s): Sujuan Wu, Junyi Li, Mushui Cao, Jing Yang, Yixue Li, Yuanyuan Li
Software Mentions: 4
Published: over 8 years ago
10.1155/2021/9126351
Predicting the Survival Probability of Neuroendocrine Tumor Populations: Developing and Evaluating a New Predictive Nomogram
Cited by: 1
Author(s): Chen Jian-xian, Yan Lin, Yiliang Meng, Ai-Xia Zhao, Xiaojuan Huang, Rong Liang, Yongqiang Li, Zhi-Hui Liu
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12935-021-02158-6
Development and validation of a risk prediction score for patients with nasopharyngeal carcinoma
Cited by: 2
Author(s): Ning Xue, Guoping Ou, Weiguo Ma, Lina Jia, Jiahe Sheng, Qi Xu, Yubo Liu, Miaomiao Jia
Software Mentions: 4
Published: about 3 years ago
10.1002/cam4.1303
Identification of a novel gene pairs signature in the prognosis of gastric cancer
Cited by: 42
Author(s): Pailan Peng, Xiangyu Zhou, Guo-Dong Yi, Pengfei Chen, Fan Wang, Weiguo Dong
Software Mentions: 4
Published: almost 7 years ago
10.1186/1476-4598-13-241
OvMark: a user-friendly system for the identification of prognostic biomarkers in publically available ovarian cancer gene expression datasets
Cited by: 22
Author(s): Stephen F. Madden, Colin Clarke, Britta K. Stordal, Mark Carey, Russell Broaddus, William M. Gallagher, John Crown, Gordon B. Mills, Bryan T. Hennessy
Software Mentions: 4
Published: almost 11 years ago
10.1371/journal.pmed.1002711
Deep learning for lung cancer prognostication: A retrospective multi-cohort radiomics study
Cited by: 358
Author(s): Ahmed Hosny, Chintan Parmar, Thibaud Coroller, Patrick Großmann, Roman Zeleznik, Avnish Kumar, Johan Bussink, Robert J. Gillies, Raymond H. Mak, Hugo J.W.L. Aerts
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0206108
Peritumoral radiomics features predict distant metastasis in locally advanced NSCLC
Cited by: 100
Author(s): T Dou, Thibaud Coroller, Joost J.M. van Griethuysen, Raymond H. Mak, Hugo J.W.L. Aerts
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0169172
Associations of Radiomic Data Extracted from Static and Respiratory-Gated CT Scans with Disease Recurrence in Lung Cancer Patients Treated with SBRT
Cited by: 82
Author(s): Elizabeth Huynh, Thibaud Coroller, Vivek Narayan, Vishesh Agrawal, John Romano, Idalid Franco, Chintan Parmar, Ying Hou, Raymond H. Mak, Hugo J.W.L. Aerts
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0164688
Recalibration of the ACC/AHA Risk Score in Two Population-Based German Cohorts
Cited by: 22
Author(s): Tonia de las Heras Gala, Marie Henrike Geisel, Annette Peters, Barbara Thorand, Jens Baumert, Nils Lehmann, Karl‐Heinz Jöckel, Susanne Moebus, Raimund Erbel, Christine Meisinger, Amir A. Mahabadi, Wolfgang Köenig
Software Mentions: 4
Published: about 8 years ago
10.1371/journal.pone.0232639
Computed tomography-derived radiomic signature of head and neck squamous cell carcinoma (peri)tumoral tissue for the prediction of locoregional recurrence and distant metastasis after concurrent chemo-radiotherapy
Cited by: 27
Author(s): Simon Keek, Sebastian Sanduleanu, Frederik Wesseling, Reinout de Roest, Michiel W. M. van den Brekel, Martijn van der Heijden, Conchita Vens, Giuseppina Calareso, Lisa Licitra, Kathrin Scheckenbach, Marije R. Vergeer, C. René Leemans, Ruud H. Brakenhoff, Irene Nauta, Stefano Cavalieri, Henry C. Woodruff, Tito Poli, Ralph T.H. Leijenaar, Frank Hoebers, Philippe Lambin
Software Mentions: 4
Published: over 4 years ago
10.3390/cancers12030632
Model-Based Integration Analysis Revealed Presence of Novel Prognostic miRNA Targets and Important Cancer Driver Genes in Triple-Negative Breast Cancers
Cited by: 6
Author(s): Masood Zaka, Chris W. Sutton, Yonghong Peng, Savas Konur
Software Mentions: 4
Published: over 4 years ago
10.1111/cpr.12861
RNA processing genes characterize RNA splicing and further stratify colorectal cancer
Cited by: 4
Author(s): Xiaofan Lu, Yu Jie Zhou, Jialin Meng, Liyun Jiang, Jun Gao, Changhong Yu, Hangyu Yan, Yang Wang, Bing Zhang, Xiaobo Li, Fangrong Yan
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2021.649208
TRIB3 Promotes the Malignant Progression of Bladder Cancer: An Integrated Analysis of Bioinformatics and in vitro Experiments
Cited by: 4
Author(s): Jieping Yang, Jiaxing Lin, Jing An, Yunan Zhao, Siyang Jing, Meng Yu, Yuyan Zhu, Yang Yao
Software Mentions: 4
Published: over 3 years ago
10.3389/fimmu.2021.547333
The Immune Heterogeneity Between Pulmonary Adenocarcinoma and Squamous Cell Carcinoma: A Comprehensive Analysis Based on lncRNA Model
Cited by: 11
Author(s): Tao Yan, Guoyuan Ma, Kai Wang, Weidong Liu, W. L. Zhong, Jiajun Du
Software Mentions: 4
Published: over 3 years ago
10.3389/fmolb.2021.608369
Identification of a DNA Repair Gene Signature and Establishment of a Prognostic Nomogram Predicting Biochemical-Recurrence-Free Survival of Prostate Cancer
Cited by: 9
Author(s): Gongwei Long, Wei Ouyang, Yucong Zhang, Guoliang Sun, Jiahua Gan, Zhiquan Hu, Heng Li
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.705547
Construction of Novel Methylation-Driven Gene Model and Investigation of PARVB Function in Glioblastoma
Cited by: 3
Author(s): Wanli Yu, Pengfei Wu, Fang Wang, Miao Li, Bo Han, Zhiqun Jiang
Software Mentions: 4
Published: about 3 years ago
10.3389/fonc.2019.01057
Prognostic Value of Texture Analysis Based on Pretreatment DWI-Weighted MRI for Esophageal Squamous Cell Carcinoma Patients Treated With Concurrent Chemo-Radiotherapy
Cited by: 8
Author(s): Zhenjiang Li, Chun Han, Lan Wang, Jian Zhu, Yong Yin, Baosheng Li
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-017-02425-5
Associations between radiologist-defined semantic and automatically computed radiomic features in non-small cell lung cancer
Cited by: 78
Author(s): Stephen Yip, Ying Liu, Chintan Parmar, Qian Li, Liu Shi-chang, Fangyuan Qu, Zhaoxiang Ye, Robert J. Gillies, Hugo J.W.L. Aerts
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-019-50224-x
Network-based method for drug target discovery at the isoform level
Cited by: 6
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Linna Liu, Peng Dai
Software Mentions: 4
Published: about 5 years ago
10.1186/s12967-020-02527-1
Development and validation of a cancer stem cell-related signature for prognostic prediction in pancreatic ductal adenocarcinoma
Cited by: 15
Author(s): Zengyu Feng, Minmin Shi, Kexian Li, Yang Ma, Lingxi Jiang, Hao Chen, Chenghong Peng
Software Mentions: 4
Published: about 4 years ago
10.1002/1878-0261.12638
Upregulation of <i>BCAM</i> and its sense lncRNA <i>BAN</i> are associated with gastric cancer metastasis and poor prognosis
Cited by: 11
Author(s): Juan Jin, Shanshan Xie, Qiang Sun, Huang Zhenxia, Kanghua Chen, Dongyang Guo, Xianping Rao, Yujie Deng, Yiman Liu, Shuang Li, Wenyu Cui, Valentina Chanu Maibam, Junni Wang, Wei Zhuo, Tian Zhou
Software Mentions: 3
Published: almost 5 years ago
10.7150/jca.39467
Prognostic role of ACTL10 in Cytogenetic Normal Acute Myeloid Leukemia
Cited by: 3
Author(s): Rui Lai, Weilong Zhang, Xue He, Xinhui Liao, Xiaoni Liu, Wei Fu, Ping Yang, Jing Wang, Kai Hu, Xiaoliang Yuan, Xiuru Zhang, Hongmei Jing, Weiyou Liu
Software Mentions: 3
Published: almost 5 years ago
10.7554/eLife.23421
Defining the biological basis of radiomic phenotypes in lung cancer
Cited by: 229
Author(s): Patrick Großmann, Olya Stringfield, Nehmé El-Hachem, Marilyn M. Bui, Emmanuel Rios Velazquez, Chintan Parmar, Ralph T.H. Leijenaar, Benjamin Haibe‐Kains, Philippe Lambin, Robert J. Gillies, Hugo J.W.L. Aerts
Software Mentions: 3
Published: over 7 years ago
10.3389/fonc.2021.553594
Comprehensive In Silico Analysis of a Novel Serum Exosome-Derived Competitive Endogenous RNA Network for Constructing a Prognostic Model for Glioblastoma
Cited by: 9
Author(s): Zihao Wang, Xin Ji, Lu Gao, Xiaopeng Guo, Wei Lian, Kan Deng, Bing Xing
Software Mentions: 3
Published: over 3 years ago
10.1186/s12967-019-1904-5
High NCALD expression predicts poor prognosis of cytogenetic normal acute myeloid leukemia
Cited by: 8
Author(s): Ying Song, Weilong Zhang, Xue He, Xiaoni Liu, Ping Yang, Jing Wang, Kai Hu, Weiyou Liu, Xiuru Zhang, Hongmei Jing, Xiaoliang Yuan
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-015-2100-5
Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets
Cited by: 5
Author(s): Richard Newton, Lorenz Wernisch
Software Mentions: 3
Published: about 9 years ago
10.7150/jca.33805
Clinical prognostic implications of EPB41L4A expression in multiple myeloma
Cited by: 5
Author(s): Weilong Zhang, Rui Lai, Xue He, Xiaoni Liu, Ye Zhang, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiaoliang Yuan, Xiuru Zhang, Weiyou Liu, Hongmei Jing
Software Mentions: 3
Published: almost 5 years ago
10.18632/aging.102566
Development and validation of a nomogram with an autophagy-related gene signature for predicting survival in patients with glioblastoma
Cited by: 63
Author(s): Zihao Wang, Lu Gao, Xiaopeng Guo, Cheng Feng, Wei Lian, Kan Deng, Bing Xing
Software Mentions: 3
Published: almost 5 years ago
10.1186/1471-2164-16-S12-S7
A novel analysis strategy for integrating methylation and expression data reveals core pathways for thyroid cancer aetiology
Cited by: 3
Author(s): Buğra Özer, Uğur Sezerman
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41598-019-45165-4
MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature
Cited by: 26
Author(s): Deena M.A. Gendoo, Michael Zon, Vandana Sandhu, Venkata SK. Manem, Natchar Ratanasirigulchai, Gregory M. Chen, Levi Waldron, Benjamin Haibe‐Kains
Software Mentions: 3
Published: over 5 years ago
10.3389/fmed.2021.686885
Genome-Wide Analysis Reveals Hypoxic Microenvironment Is Associated With Immunosuppression in Poor Survival of Stage II/III Colorectal Cancer Patients
Cited by: 4
Author(s): Yufeng Chen, Zhaoliang Yu, Min‐Yi Lv, Bin Zheng, Yongtao Tan, Jia Ke, Xuanhui Liu, Zerong Cai, Yifeng Zou, Ping Lan, Xiaojian Wu, Feng Gao
Software Mentions: 3
Published: over 3 years ago
10.1002/cam4.2956
Identification of aberrantly methylated differentially expressed genes and associated pathways in endometrial cancer using integrated bioinformatic analysis
Cited by: 24
Author(s): Jinhui Liu, Yicong Wan, Siyue Li, Huaide Qiu, Yi Jiang, Xiaoling Ma, Shulin Zhou, Wenjun Cheng
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2020.617174
Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
Cited by: 11
Author(s): Sijin Sun, Kailun Fei, Guochao Zhang, Juhong Wang, Yannan Yang, Wei Guo, Zhenlin Yang, Jie Wang, Qi Xue, Yibo Gao, Jie He
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0203824
Dissecting cancer heterogeneity based on dimension reduction of transcriptomic profiles using extreme learning machines
Cited by: 11
Author(s): Kejun Wang, Xin Duan, Feng Gao, Wei Wang, Liangliang Liu, Xin Wang
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0078299
The Landscape of Candidate Driver Genes Differs between Male and Female Breast Cancer
Cited by: 44
Author(s): Ida Johansson, Markus Ringnér, Ingrid Hedenfalk
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0142433
Comparison of the Prognostic Utility of the Diverse Molecular Data among lncRNA, DNA Methylation, microRNA, and mRNA across Five Human Cancers
Cited by: 14
Author(s): Li Xu, Feng Liang, Changning Liu, Liangcai Zhang, Yinghui Li, Li Yu, Shanguang Chen, Jianghui Xiong
Software Mentions: 3
Published: almost 9 years ago
10.1038/s41416-019-0572-9
Aberrations in Notch-Hedgehog signalling reveal cancer stem cells harbouring conserved oncogenic properties associated with hypoxia and immunoevasion
Cited by: 30
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0069211
When History Repeats Itself: Exploring the Genetic Architecture of Host-Plant Adaptation in Two Closely Related Lepidopteran Species
Cited by: 13
Author(s): Hermine Alexandre, Sergine Ponsard, Denis Bourguet, Renaud Vitalis, Philippe Audiot, Sandrine Cros‐Arteil, Réjane Streiff
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pcbi.1002875
Significance Analysis of Prognostic Signatures
Cited by: 30
Author(s): Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schroeder, Thomas S. Risch, John Quackenbush, Benjamin Haibe‐Kains
Software Mentions: 2
Published: almost 12 years ago
10.1155/2017/2917925
Validation of Nomograms for Survival and Metastases after Hysterectomy and Adjuvant Therapy in Uterine Cervical Cancer with Risk Factors
Cited by: 7
Author(s): Won Sup Yoon, Dae Sik Yang, Jung Ae Lee, Nam Kwon Lee, Young Je Park, Chul Yong Kim, Nak Woo Lee, Jin Hwa Hong, Jae Kwan Lee, Jae Yun Song
Software Mentions: 2
Published: almost 8 years ago
10.3389/fmolb.2020.00118
A DNA Methylation-Based Panel for the Prognosis and Diagnosis of Patients With Breast Cancer and Its Mechanisms
Cited by: 11
Author(s): Xiaoping Li, Jian Hou, Chen Chen, Li Guan, He-xuan Hu, Sheng Li
Software Mentions: 2
Published: over 4 years ago
10.3389/fmolb.2021.668888
Prognostic Immunity and Therapeutic Sensitivity Analyses Based on Differential Genomic Instability-Associated LncRNAs in Left- and Right-Sided Colon Adenocarcinoma
Cited by: 6
Author(s): Jun Guo, Tianyi Xia, Shen-Hui Deng, Handong Wang, Binbin Cui, Yanlong Liu
Software Mentions: 2
Published: about 3 years ago
10.7717/peerj.10183
A 14 immune-related gene signature predicts clinical outcomes of kidney renal clear cell carcinoma
Cited by: 8
Author(s): Yong Zou, Chuan Hu
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-015-1687-x
Tumor characterization and stratification by integrated molecular profiles reveals essential pan-cancer features
Cited by: 30
Author(s): Zhaoqi Liu, Shihua Zhang
Software Mentions: 2
Published: over 9 years ago
10.3389/fonc.2016.00072
Relationship between the Temporal Changes in Positron-Emission-Tomography-Imaging-Based Textural Features and Pathologic Response and Survival in Esophageal Cancer Patients
Cited by: 46
Author(s): Stephen Yip, Thibaud Coroller, Nina N. Sanford, Harvey J. Mamon, Hugo J.W.L. Aerts, R. Berbeco
Software Mentions: 2
Published: over 8 years ago
10.3390/microarrays5040024
OSAnalyzer: A Bioinformatics Tool for the Analysis of Gene Polymorphisms Enriched with Clinical Outcomes
Cited by: 14
Author(s): Giuseppe Agapito, Cirino Botta, PH Guzzi, Mariamena Arbitrio, Beniamino Di Martino, Pierfrancesco Tassone, Pierosandro Tagliaferri, Mario Cannataro
Software Mentions: 2
Published: about 8 years ago
10.3389/fonc.2021.711258
Development and Verification of a Prostate Cancer Prognostic Signature Based on an Immunogenomic Landscape Analysis
Cited by: 2
Author(s): Hong Cheng, Yi Wang, Chunhui Liu, Tiange Wu, Shuqiu Chen, Ming Chen
Software Mentions: 2
Published: about 3 years ago
10.3389/fonc.2021.642677
NCCBM, a Nomogram Prognostic Model in Breast Cancer Patients With Brain Metastasis
Cited by: 7
Author(s): Qiang Liu, Xiangyi Kong, Zhongzhao Wang, Xiangyu Wang, Wenxiang Zhang, Bolun Ai, Ran Gao, Yi Fang, Jing Wang
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2020.00365
Reassessment of American Joint Committee on Cancer Staging for Stage III Renal Cell Carcinoma With Nodal Involvement: Propensity Score Matched Analyses of a Large Population-Based Study
Cited by: 2
Author(s): Jianglong Han, Qin Li, Ping Li, Shijie Wang, Rui Zhang, Yunfeng Qiao, Qing Song, Zhenming Fu
Software Mentions: 2
Published: over 4 years ago
10.1186/bcr2834
Ki-67 can be used for further classification of triple negative breast cancer into two subtypes with different response and prognosis
Cited by: 196
Author(s): Bhumsuk Keam, Seock‐Ah Im, Kyung-Hun Lee, Sae‐Won Han, Do‐Youn Oh, Jee Hyun Kim, Se‐Hoon Lee, Wonshik Han, Dong-Wan Kim, Tae-You Kim, In Ae Park, Dong‐Young Noh, Dae Seog Heo, Yung‐Jue Bang
Software Mentions: 2
Published: over 13 years ago
10.1038/s41598-017-03577-0
A new look at risk patterns related to coronary heart disease incidence using survival tree analysis: 12 Years Longitudinal Study
Cited by: 7
Author(s): Azra Ramezankhani, Farideh Bagherzadeh‐Khiabani, Davood Khalili, Fereidoun Azizi, Farzad Hadaegh
Software Mentions: 2
Published: over 7 years ago
10.1186/s12885-016-2659-5
Imaging-genomics reveals driving pathways of MRI derived volumetric tumor phenotype features in Glioblastoma
Cited by: 55
Author(s): Patrick Großmann, David Gutman, William D. Dunn, Chad A. Holder, Hugo J.W.L. Aerts
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-59656-2
Assessment of modelling strategies for drug response prediction in cell lines and xenografts
Cited by: 26
Author(s): Roman Kurilov, Benjamin Haibe‐Kains, Benedikt Brors
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-80274-5
A novel immune prognostic index for stratification of high-risk patients with early breast cancer
Cited by: 3
Author(s): Hannah Lee, Mi Kwon, Bon Wook Koo, Hee Geon Park, Jinil Han, Young Kee Shin
Software Mentions: 2
Published: almost 4 years ago
10.3390/cancers13153799
Altona Prognostic Index: A New Prognostic Index for ER-Positive and Her2-Negative Breast Cancer of No Special Type
Cited by: 2
Author(s): Anne-Sophie Wegscheider, Bernhard Ulm, Kay Friedrichs, Christoph Lindner, Axel Niendorf
Software Mentions: 2
Published: over 3 years ago
10.3390/cancers13164048
Role of PLEXIND1/TGFβ Signaling Axis in Pancreatic Ductal Adenocarcinoma Progression Correlates with the Mutational Status of KRAS
Cited by: 4
Author(s): Sneha Vivekanandhan, Vijay Sagar Madamsetty, Ramcharan Singh Angom, Shamit K. Dutta, Enfeng Wang, Thomas R. Caulfield, Alexandre A. Pletnev, Rosanna Upstill-Goddard, Yan W. Asmann, David K. Chang, Mark R. Spaller, Debabrata Mukhopadhyay
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0187908
Radiographic prediction of meningioma grade by semantic and radiomic features
Cited by: 102
Author(s): Thibaud Coroller, Wenya Linda Bi, Elizabeth Huynh, Malak Abedalthagafi, Ayal A. Aizer, Noah F. Greenwald, Chintan Parmar, Vivek Narayan, Winona Wu, Samuel Miranda de Moura, Saksham Gupta, Rameen Beroukhim, Patrick Y. Wen, Ossama Al‐Mefty, Ian F. Dunn, Sandro Santagata, Brian M. Alexander, Raymond Y. Huang, Hugo J.W.L. Aerts
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0056821
Parent-Offspring Conflict and the Persistence of Pregnancy-Induced Hypertension in Modern Humans
Cited by: 18
Author(s): Birgitte Hollegaard, Sean G. Byars, Jacob Alexander Lykke, Jacobus J. Boomsma
Software Mentions: 1
Published: over 11 years ago