Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-021-00919-6

https://doi.org/10.1186/s13073-021-00919-6

Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery

Cited by: 14
Author(s): Rima Chakaroun, Lucas Massier, Anna Heintz‐Buschart, Nedal Said, Jörg Fallmann, Alyce Crane, Tatjana Schütz, Arne Dietrich, Matthias Blüher, Michael Stümvoll, Niculina Musat, Peter Kovacs
Published: over 3 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: rfUtilities
Random Forests Model Selection and Performance Evaluation
Papers that mentioned: 21
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431