Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giz028

https://doi.org/10.1093/gigascience/giz028

Rice Galaxy: an open resource for plant science

Cited by: 13
Author(s): Venice Margarette Juanillas, Alexis Dereeper, Nicolas Beaume, Gaëtan Droc, Joshua Gregor A. Dizon, J. Mendoza, Jon Peter Perdon, Locedie Mansueto, Lindsay R. Triplett, Jillian M. Lang, Gabriel Zhou, Kunalan Ratharanjan, Beth Plale, Jason Haga, Jan E. Leach, Manuel Ruiz, Michael J. Thomson, Nickolai Alexandrov, Pierre Larmande, Tobias Kretzschmar, Ramil Mauleon
Published: over 5 years ago

Software Mentions 18

bioconductor: LEA
LEA: an R package for Landscape and Ecological Association Studies
Papers that mentioned: 139
cran: aws
Adaptive Weights Smoothing
Papers that mentioned: 3
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: fpc
Flexible Procedures for Clustering
Papers that mentioned: 99
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: miscTools
Miscellaneous Tools and Utilities
Papers that mentioned: 4
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: plink
IRT Separate Calibration Linking Methods
Papers that mentioned: 399
cran: pRF
Permutation Significance for Random Forests
Papers that mentioned: 13
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: rrBLUP
Ridge Regression and Other Kernels for Genomic Selection
Papers that mentioned: 263
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: aws
Utility to manage your Amazon Web Services and run Fabric against filtered set of EC2 instances.
Papers that mentioned: 3
pypi: cluster

Papers that mentioned: 416
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: miscTools
Tools for most projects
Papers that mentioned: 4
pypi: plink
A full featured Tk-based knot and link editor
Papers that mentioned: 399