An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1093/gigascience/giz028

https://doi.org/10.1093/gigascience/giz028

Rice Galaxy: an open resource for plant science

Cited by: 13
Author(s): Venice Margarette Juanillas, Alexis Dereeper, Nicolas Beaume, Gaëtan Droc, Joshua Gregor A. Dizon, J. Mendoza, Jon Peter Perdon, Locedie Mansueto, Lindsay R. Triplett, Jillian M. Lang, Gabriel Zhou, Kunalan Ratharanjan, Beth Plale, Jason Haga, Jan E. Leach, Manuel Ruiz, Michael J. Thomson, Nickolai Alexandrov, Pierre Larmande, Tobias Kretzschmar, Ramil Mauleon
Published: about 6 years ago

Software Mentions 18

bioconductor: LEA
LEA: an R package for Landscape and Ecological Association Studies
Papers that mentioned: 139
Very Likely Science (100)
cran: aws
Adaptive Weights Smoothing
Papers that mentioned: 3
Very Likely Science (75)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
cran: fpc
Flexible Procedures for Clustering
Papers that mentioned: 99
Very Likely Science (75)
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
Very Likely Science (100)
cran: miscTools
Miscellaneous Tools and Utilities
Papers that mentioned: 4
Very Likely Science (75)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
cran: plink
IRT Separate Calibration Linking Methods
Papers that mentioned: 399
Very Likely Science (100)
cran: pRF
Permutation Significance for Random Forests
Papers that mentioned: 13
Very Likely Science (83)
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
Very Likely Science (95)
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
Very Likely Science (100)
cran: rrBLUP
Ridge Regression and Other Kernels for Genomic Selection
Papers that mentioned: 263
Very Likely Science (93)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
pypi: aws
Utility to manage your Amazon Web Services and run Fabric against filtered set of EC2 instances.
Papers that mentioned: 3
Unlikely Science (10)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
Very Likely Science (100)
pypi: miscTools
Tools for most projects
Papers that mentioned: 4
Very Likely Science (65)
pypi: plink
A full featured Tk-based knot and link editor
Papers that mentioned: 399
Very Likely Science (100)