Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: fpc

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/fpc

Flexible Procedures for Clustering
35 versions
Latest release: almost 2 years ago
42 dependent packages
18,549 downloads last month

Papers Mentioning fpc 99

10.7717/peerj.5794
beadplexr: reproducible and automated analysis of multiplex bead assays
Cited by: 4
Author(s): Ulrik Stervbo, Timm H. Westhoff, Nina Babel
Software Mentions: 20
Published: about 6 years ago
10.3390/plants10020247
Machine Learning Applications and Optimization of Clustering Methods Improve the Selection of Descriptors in Blackberry Germplasm Banks
Cited by: 5
Author(s): Juan Camilo Henao-Rojas, María Gladis Rosero-Alpala, Carolina Ortiz-Muñoz, Carlos Enrique Velásquez-Arroyo, William A. León-Rueda, Joaquín Guillermo Ramírez‐Gil
Software Mentions: 19
Published: almost 4 years ago
10.1093/gigascience/giz028
Rice Galaxy: an open resource for plant science
Cited by: 13
Author(s): Venice Margarette Juanillas, Alexis Dereeper, Nicolas Beaume, Gaëtan Droc, Joshua Gregor A. Dizon, J. Mendoza, Jon Peter Perdon, Locedie Mansueto, Lindsay R. Triplett, Jillian M. Lang, Gabriel Zhou, Kunalan Ratharanjan, Beth Plale, Jason Haga, Jan E. Leach, Manuel Ruiz, Michael J. Thomson, Nickolai Alexandrov, Pierre Larmande, Tobias Kretzschmar, Ramil Mauleon
Software Mentions: 18
Published: over 5 years ago
10.1038/s41597-021-00998-5
A merged microarray meta-dataset for transcriptionally profiling colorectal neoplasm formation and progression
Cited by: 4
Author(s): Michael Rohr, Jordan M. Beardsley, Sai Preethi Nakkina, Xiang Zhu, Jihad Aljabban, Dexter Hadley, Deborah A. Altomare
Software Mentions: 17
Published: over 3 years ago
10.1186/s13073-020-00823-5
Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients
Cited by: 169
Author(s): Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos, Melanie Nuesch-Germano, Konstantina Gkizeli, Lorenzo Bonaguro, Nico Reusch, Kevin Baßler, Maria Saridaki, Rainer Knoll, Tal Pecht, Theodore S. Kapellos, Sarandia Doulou, Charlotte Kröger, Miriam Herbert, Lisa Holsten, Arik Horne, Ioanna Gemünd, Nikoletta Rovina, Shobhit Agrawal, K. Dahm, Martina van Uelft, Anna Drews, Lena Lenkeit, Niklas Bruse, Jelle Gerretsen, Jannik Gierlich, Matthias Becker, Kristian Händler, Michael Kraut, Heidi Theis, Simachew Abebe Mengiste, Elena De Domenico, Jonas Schulte-Schrepping, Lea Seep, Jan Raabe, Christoph Hoffmeister, Michael ToVinh, Verena Keitel, Gereon J Rieke, Valentina Talevi, Dirk Skowasch, N. Ahmad Aziz, Peter Pickkers, Frank L. van de Veerdonk, Mihai G. Netea, Joachim L. Schultze, Matthijs Kox, Monique M.B. Breteler, Jacob Nattermann, Antonia Koutsoukou, Evangelos J. Giamarellos‐Bourboulis, Thomas Ulas
Software Mentions: 13
Published: almost 4 years ago
10.1038/s41396-018-0251-5
Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammals
Cited by: 56
Author(s): Amanda C. Perofsky, Rebecca J. Lewis, Lauren Ancel Meyers
Software Mentions: 12
Published: over 6 years ago
10.1186/s12879-019-4585-z
Development of a high number, high coverage dog rabies vaccination programme in Sri Lanka
Cited by: 8
Author(s): Carlos Sánchez-Soriano, Andrew D Gibson, Luke Gamble, Jordana L. Burdon Bailey, Samantha Green, Mark Green, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Stella Mazeri
Software Mentions: 11
Published: about 5 years ago
10.1371/journal.pone.0034594
Heterogeneity of Inflammatory and Cytokine Networks in Chronic Plaque Psoriasis
Cited by: 71
Author(s): William R. Swindell, Xianying Xing, Philip E. Stuart, Cynthia S. Chen, Abhishek Aphale, Rajan P. Nair, John J. Voorhees, James T. Elder, Andrew Johnston, Jóhann E. Guðjónsson
Software Mentions: 10
Published: over 12 years ago
10.7554/eLife.65088
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Cited by: 604
Author(s): Francesco Beghini, Lauren J. McIver, Aitor Blanco-Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Paolo Manghi, Matthias Scholz, Andrew Maltez Thomas, Mireia Vallès-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A. Franzosa, Nicola Segata
Software Mentions: 10
Published: over 3 years ago
10.1002/ece3.7563
The interaction of resource use and gene flow on the phenotypic divergence of benthic and pelagic morphs of Icelandic Arctic charr (<i>Salvelinus alpinus</i>)
Cited by: 10
Author(s): Matthew K. Brachmann, Kevin J. Parsons, Skúli Skúlason, Moira M. Ferguson
Software Mentions: 10
Published: over 3 years ago
10.3389/fpls.2020.587426
Genome-Wide DArTSeq Genotyping and Phenotypic Based Assessment of Within and Among Accessions Diversity and Effective Sample Size in the Diverse Sorghum, Pearl Millet, and Pigeonpea Landraces
Cited by: 13
Author(s): Victor Allan, Mani Vetriventhan, R. Senthil, S. Geetha, Santosh Deshpande, Abhishek Rathore, Vinod Kumar, Prabhat Kumar Singh, Surender Reddymalla, V. C. R. Azevedo
Software Mentions: 10
Published: about 4 years ago
10.1186/s13058-019-1148-6
Identification of three subtypes of triple-negative breast cancer with potential therapeutic implications
Cited by: 70
Author(s): Pascal Jézéquel, Olivier Kerdraon, Hubert Hondermarck, Catherine Guérin‐Charbonnel, Hamza Lasla, Wilfried Gouraud, Jean-Luc Canon, Andrea Gombos, Florence Dalenc, Suzette Delaloge, Jérôme Lemonnier, Delphine Loussouarn, Véronique Verrièle, Mario Campone
Software Mentions: 9
Published: over 5 years ago
10.3390/cancers13081768
Systematic Analysis of the Transcriptome Profiles and Co-Expression Networks of Tumour Endothelial Cells Identifies Several Tumour-Associated Modules and Potential Therapeutic Targets in Hepatocellular Carcinoma
Cited by: 8
Author(s): Thomas Mohr, Sonja Katz, Verena Paulitschke, Nadim Aizarani, Alexander Tolios
Software Mentions: 9
Published: over 3 years ago
10.1038/srep08508
No difference in small bowel microbiota between patients with irritable bowel syndrome and healthy controls
Cited by: 64
Author(s): Aldona Dlugosz, Björn Winckler, E. Lundin, Katherina Zakikhany, Gunnar Sandström, Weimin Ye, Lars Engstrand, Greger Lindberg
Software Mentions: 9
Published: almost 10 years ago
10.1172/jci.insight.138751
In utero human intestine harbors unique metabolome, including bacterial metabolites
Cited by: 27
Author(s): Yujia Li, Jessica Toothaker, Shira Ben-Simon, Lital Ozeri, Ron Schweitzer, Blake McCourt, Collin C. McCourt, Lael Werner, Scott B. Snapper, Dror S. Shouval, Soliman Khatib, Omry Koren, Sameer Agnihorti, George C. Tseng, Liza Konnikova
Software Mentions: 8
Published: about 4 years ago
10.1038/s41598-020-59524-z
Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cited by: 16
Author(s): Ruibo Cai, Ehsan Kayal, Catharina Alves‐de‐Souza, Estelle Bigeard, Erwan Corre, Christian Jeanthon, Dominique Marie, Betina M. Porcel, Raffaele Siano, Jeremy Szymczak, Matthias Wolf, Laure Guillou
Software Mentions: 8
Published: almost 5 years ago
10.1093/gigascience/giz004
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches
Cited by: 103
Author(s): Darshan B. Dhakan, Abhijit Maji, Ashok Sharma, Rituja Saxena, Joby Pulikkan, Tony Grace, Andrés Gómez, Joy Scaria, Katherine R. Amato, Vineet K. Sharma
Software Mentions: 8
Published: almost 6 years ago
10.1186/gb-2013-14-12-r137
Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas
Cited by: 76
Author(s): Marcus Renner, Thomas Wolf, Hannah Meyer, Wolfgang Hartmann, Roland Penzel, Alexis Ulrich, Burkhard Lehner, Volker Hovestadt, Esteban Czwan, Gerlinde Egerer, Thomas Schmitt, Ingo Alldinger, Eva Kristin Renker, Volker Ehemann, Roland Eils, Eva Wardelmann, Reinhard Büttner, Peter Lichter, Benedikt Brors, Peter Schirmacher, Gunhild Mechtersheimer
Software Mentions: 8
Published: almost 12 years ago
10.3390/jpm11040272
Phenomapping of Patients with Primary Breast Cancer Using Machine Learning-Based Unsupervised Cluster Analysis
Cited by: 9
Author(s): Sara Ferro, Daniele Bottigliengo, Darío Gregori, Aline S C Fabrício, Massimo Gion, Ileana Baldi
Software Mentions: 8
Published: over 3 years ago
10.3389/fpsyg.2020.00359
Validation of the Czech Version of the Relational Needs Satisfaction Scale
Cited by: 3
Author(s): Martina Pourová, Tomáš Řiháček, Gregor Žvelc
Software Mentions: 8
Published: almost 5 years ago
10.1371/journal.pone.0238405
Persistent El Niño driven shifts in marine cyanobacteria populations
Cited by: 7
Author(s): Alyse A. Larkin, Allison R. Moreno, Adam Fagan, Alyssa Fowlds, Alani Ruiz, Adam C. Martiny
Software Mentions: 7
Published: over 4 years ago
10.1186/1751-0473-7-13
MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads
Cited by: 4
Author(s): Alexander Tyakht, Anna Popenko, Maxim S. Belenikin, Ilya Altukhov, Alexander V. Pavlenko, Elena S. Kostryukova, Oksana V. Selezneva, Andrei K. Larin, Irina Y. Karpova, Dmitry Alexeev
Software Mentions: 7
Published: about 12 years ago
10.1002/ece3.7777
Fine‐scale movements and behaviors of coyotes (<i>Canis latrans</i>) during their reproductive period
Cited by: 5
Author(s): Michael J. Chamberlain, Bradley S. Cohen, Patrick H. Wightman, Emily Rushton, Joseph W. Hinton
Software Mentions: 7
Published: over 3 years ago
10.1186/s12864-020-06888-1
A deconvolution method and its application in analyzing the cellular fractions in acute myeloid leukemia samples
Cited by: 6
Author(s): Huamei Li, Ingo G. H. Schmidt‐Wolf, Wenglong Ming, Xiao Sun, Hongde Liu
Software Mentions: 7
Published: about 4 years ago
10.1186/s40168-016-0222-x
Gut microbiota dysbiosis contributes to the development of hypertension
Cited by: 972
Author(s): Jingjing Li, Fangqing Zhao, Yidan Wang, Junru Chen, Jie Tao, Gang Tian, Shouling Wu, Wenbin Liu, Qinghua Cui, Bin Geng, Weili Zhang, Ryan Weldon, Kelda Auguste, Lei Yang, Xiaoyan Liu, Li Chen, Xinchun Yang, Baoli Zhu, Jun Cai
Software Mentions: 7
Published: almost 8 years ago
10.1186/s40168-017-0302-6
Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case–control study
Cited by: 27
Author(s): Moana Mika, Josua Maurer, Insa Korten, Aurélie Allemann, Suzanne Aebi, Silvio D. Brugger, Weihong Qi, Urs Frey, Philipp Latzin, Markus Hilty
Software Mentions: 7
Published: over 7 years ago
10.1186/s13059-020-02042-y
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Cited by: 60
Author(s): Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun Huang, Adrian Tett, Serena Manara, Federica Armanini, D. J. G. Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Vallès-Colomer, Roberta Raffaetà, Omar Rota‐Stabelli, María Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Software Mentions: 6
Published: over 4 years ago
10.7717/peerj.997
Deep sequencing of the viral<i>phoH</i>gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral<i>phoH</i>genes in the Sargasso Sea
Cited by: 34
Author(s): Dawn B. Goldsmith, Rachel Parsons, Damitu Beyene, Peter Salamon, Mya Breitbart
Software Mentions: 6
Published: over 9 years ago
10.1093/gigascience/giaa131
A methodological approach to correlate tumor heterogeneity with drug distribution profile in mass spectrometry imaging data
Cited by: 5
Author(s): Mridula Prasad, G.J. Postma, Pietro Franceschi, Lavinia Morosi, Silvia Giordano, Francesca Falcetta, Raffaella Giavazzi, Enrico Davoli, L.M.C. Buydens, Jeroen J. Jansen
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pcbi.1009118
SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data
Cited by: 6
Author(s): Jing Qi, Yang Zhou, Zhao Zhang, Shuilin Jin
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pntd.0008004
Implementation of a mass canine rabies vaccination campaign in both rural and urban regions in southern Malawi
Cited by: 14
Author(s): Carlos Sánchez-Soriano, Andrew D Gibson, Luke Gamble, Jordana L. Burdon Bailey, Dagmar Mayer, Frederic Lohr, Patrick Chikungwa, Julius L.C. Chulu, Ian Handel, Barend M. deC. Bronsvoort, Richard J. Mellanby, Stella Mazeri
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0191557
Modelling human hard palate shape with Bézier curves
Cited by: 9
Author(s): Ruud Janssen, Scott R. Moisik, Dan Dediu
Software Mentions: 6
Published: almost 7 years ago
10.3390/insects12040367
Biological Strategies of Invasive Bark Beetles and Borers Species
Cited by: 3
Author(s): Denis A. Demidko, Natalia N. Demidko, Pavel V. Mikhaylov, Svetlana M. Sultson
Software Mentions: 6
Published: over 3 years ago
10.1038/s42003-021-02012-5
High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans
Cited by: 22
Author(s): Alexandra Schoenle, Manon Hohlfeld, Karoline Hermanns, Frédéric Mahé, Colomban de Vargas, Frank Nitsche, Hartmut Arndt
Software Mentions: 6
Published: over 3 years ago
10.1186/s12864-019-5561-0
In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant
Cited by: 42
Author(s): Alessandro Silvestri, Valentina Fiorilli, Laura Miozzi, G. P. Accotto, Massimo Turina, Luisa Lanfranco
Software Mentions: 5
Published: almost 6 years ago
10.7717/peerj.8546
Proteomic similarity of the Littorinid snails in the evolutionary context
Cited by: 13
Author(s): Arina L. Maltseva, Marina A. Varfolomeeva, Arseniy Lobov, Polina Tikanova, Marina Panova, Natalia Mikhailova, Andrei I. Granovitch
Software Mentions: 5
Published: almost 5 years ago
10.1038/srep16971
Combined Mapping of Multiple clUsteriNg ALgorithms (COMMUNAL): A Robust Method for Selection of Cluster Number, K
Cited by: 15
Author(s): Timothy E. Sweeney, Albert C. Chen, Olivier Gevaert
Software Mentions: 5
Published: about 9 years ago
10.3390/ijms21124199
CCR5-Mediated Signaling is Involved in Invasion of Glioblastoma Cells in Its Microenvironment
Cited by: 39
Author(s): Metka Novak, Miha Koprivnikar Krajnc, Barbara Hrastar, Barbara Breznik, Bernarda Majc, Mateja Mlinar, Ana Rotter, Andrej Porčnik, Jernej Mlakar, Katja Stare, Richard G. Pestell, Tamara Lah Turnšek
Software Mentions: 5
Published: over 4 years ago
10.1186/s13059-021-02294-2
seqQscorer: automated quality control of next-generation sequencing data using machine learning
Cited by: 9
Author(s): Steffen Albrecht, Maximilian Sprang, Miguel A. Andrade‐Navarro, Jean-Fred Fontaine
Software Mentions: 5
Published: almost 4 years ago
10.1186/s40168-021-01018-9
Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome
Cited by: 24
Author(s): Julien Tap, Stine Störsrud, Boris Le Nevé, Aurélie Cotillard, Nicolas Pons, Joël Doré, Lena Öhman, Hans Törnblom, Muriel Derrien, Magnus Simrén
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-019-51142-8
Alterations to the Gastrointestinal Microbiome Associated with Methamphetamine Use among Young Men who have Sex with Men
Cited by: 35
Author(s): Ryan Cook, Jennifer A. Fulcher, Nicole H. Tobin, Fan Li, Dong Hoon Lee, Cora L. Woodward, Marjan Javanbakht, Ron Brookmeyer, Steven Shoptaw, Robert Bolan, Grace M. Aldrovandi, Pamina M. Gorbach
Software Mentions: 5
Published: about 5 years ago
10.1186/s12885-017-3777-4
Multi-region and single-cell sequencing reveal variable genomic heterogeneity in rectal cancer
Cited by: 28
Author(s): Mingshan Liu, Yang Liu, Jiabo Di, Zhe Su, Hong Yang, Beihai Jiang, Zaozao Wang, Zhen Meng, Fan Bai, Xiangqian Su
Software Mentions: 5
Published: about 7 years ago
10.1038/s41598-018-19717-z
Annual shifts of flow regime alteration: new insights from the Chaishitan Reservoir in China
Cited by: 12
Author(s): Yongyong Zhang, Xiaoyan Zhai, Tongtiegang Zhao
Software Mentions: 5
Published: almost 7 years ago
10.1002/ece3.917
Grassland invaders and their mycorrhizal symbionts: a study across climate and invasion gradients
Cited by: 21
Author(s): Rebecca A. Bunn, Ylva Lekberg, Christopher Gallagher, Søren Rosendahl, Philip W. Ramsey
Software Mentions: 5
Published: almost 11 years ago
10.1038/s41598-017-10334-w
A functional approach to the structural complexity of coral assemblages based on colony morphological features
Cited by: 42
Author(s): Vianney Denis, Lauriane Ribas-Deulofeu, Nicolas Sturaro, Chao‐Yang Kuo, Chaolun Allen Chen
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pcbi.1007564
Regulatory context drives conservation of glycine riboswitch aptamers
Cited by: 6
Author(s): Matt Crum, Nikhil Ram-Mohan, Michelle M. Meyer
Software Mentions: 5
Published: about 5 years ago
10.1038/s41598-020-68617-8
The origin of early Acheulean expansion in Europe 700 ka ago: new findings at Notarchirico (Italy)
Cited by: 34
Author(s): Marie‐Hélène Moncel, Carmen Santagata, Alison Pereira, Sébastien Nomade, Pierre Voinchet, Jean‐Jacques Bahain, Camille Daujeard, Antonio Curci, Cristina Lemorini, Bruce Hardy, Giacomo Eramo, Claudio Berto, Jean‐Paul Raynal, Marta Arzarello, Beniamino Mecozzi, Alessio Iannucci, Raffaele Sardella, Ignazio Allegretta, Emanuela Delluniversità, Roberto Terzano, Pauline Dugas, Gwenolé Jouanic, Alain Queffelec, Andrea D’Andrea, Rosario Valentini, Eleonora Minucci, Laura Carpentiero, Marcello Piperno
Software Mentions: 5
Published: over 4 years ago
10.7717/peerj.8767
Application of artificially intelligent systems for the identification of discrete fossiliferous levels
Cited by: 9
Author(s): David Manuel Martín-Perea, Lloyd A. Courtenay, M. Soledad Domingo, Jorge Morales
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-021-83340-8
Head-to-head comparison of clustering methods for heterogeneous data: a simulation-driven benchmark
Cited by: 26
Author(s): Gregoire Preud’homme, Kévin Duarte, Kévin Dalleau, Claire Lacomblez, Emmanuel Bresso, Malika Smaïl-Tabbone, Miguel Couceiro, Marie‐Dominique Devignes, Masatake Kobayashi, Olivier Huttin, João Pedro Ferreira, Faı̈ez Zannad, Patrick Rossignol, Nicolas Girerd
Software Mentions: 4
Published: almost 4 years ago
10.3390/ijms19030666
Phenotyping of Chronic Obstructive Pulmonary Disease Based on the Integration of Metabolomes and Clinical Characteristics
Cited by: 34
Author(s): Kalle Kilk, Argo Aug, Aigar Ottas, Ursel Soomets, Siiri Altraja, Alan Altraja
Software Mentions: 4
Published: almost 7 years ago
10.1186/s12864-016-3286-x
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
Cited by: 91
Author(s): Ann C. Gregory, Sergei A. Solonenko, J. Cesar Ignacio‐Espinoza, Kurt LaButti, Alex Copeland, Sebastian Sudek, Ashley Maitland, Lauren Chittick, Filipa Santos, Joshua S. Weitz, Alexandra Z. Worden, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 4
Published: about 8 years ago
10.1186/s12870-017-1059-6
Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids
Cited by: 86
Author(s): Beiping Tan, Dário Grattapaglia, Gustavo Salgado Martins, Karina Zamprogno Ferreira, Björn Sundberg, Pär K. Ingvarsson
Software Mentions: 4
Published: over 7 years ago
10.1186/s13567-014-0114-7
Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle
Cited by: 25
Author(s): Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc’H, Hélène Verheyden, Loïc Legrand, Véronique Bachy, Luc Chabanne, Guy Joncour, Renaud Maillard, Henri-Jean Boulouis, Nadia Haddad, Xavier Bailly, Agnès Leblond
Software Mentions: 4
Published: about 10 years ago
10.3389/fcimb.2021.573923
Impact of the Gut Microbiome on the Progression of Hepatitis B Virus Related Acute-on-Chronic Liver Failure
Cited by: 6
Author(s): Xuebing Yao, Haiping Yu, Guoyin Fan, Haihong Xiang, Li‐Hong Long, Hui Xu, Zhiguo Wu, Mingfa Chen, Wen-Na Xi, Gao Z, Cuiyun Liu, Wenlan Gong, Aoyu Yang, Ke Sun, Rongyan Yu, Junrong Liang, Baogang Xie, Shihui Sun
Software Mentions: 4
Published: over 3 years ago
10.1186/s12890-018-0675-8
Latent class analysis to define radiological subgroups in pulmonary nontuberculous mycobacterial disease
Cited by: 12
Author(s): Steven Cowman, Joseph Jacob, S. Obaidee, Andres Floto, Robert Wilson, Charles Haworth, Michael R. Loebinger
Software Mentions: 4
Published: over 6 years ago
10.1186/s13620-021-00204-3
Identification of different attitudes towards paratuberculosis control using cluster analysis applied on data from an anonymous survey among German cattle farmers
Cited by: 2
Author(s): Veit Zoche-Golob, R. Pützschel, Esra Einax, Karsten Donat
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0073371
Conservation Priorities in a Biodiversity Hotspot: Analysis of Narrow Endemic Plant Species in New Caledonia
Cited by: 92
Author(s): Adrien S. Wulff, Peter M. Hollingsworth, Antje Ahrends, Tanguy Jaffré, Jean‐Marie Veillon, Laurent L’Huillier, Bruno Fogliani
Software Mentions: 4
Published: over 11 years ago
10.1038/s41598-020-68460-x
Biomass addition alters community assembly in ultrafiltration membrane biofilms
Cited by: 2
Author(s): Marisa O.D. Silva, Jakob Pernthaler
Software Mentions: 3
Published: over 4 years ago
10.1186/s12864-017-3667-9
Cross-disorder comparative analysis of comorbid conditions reveals novel autism candidate genes
Cited by: 23
Author(s): Leticia Díaz-Beltrán, Francisco J. Esteban, Maya Varma, Alp Ortuzk, Maude M. David, Dennis P. Wall
Software Mentions: 3
Published: over 7 years ago
10.1186/s12944-021-01475-z
Risk stratification of ST-segment elevation myocardial infarction (STEMI) patients using machine learning based on lipid profiles
Cited by: 12
Author(s): Yuzhou Xue, Jian Shen, Wang Hong, Wei Zhou, Zhenxian Xiang, Yuansong Zhu, Chuiguo Huang, Suxin Luo
Software Mentions: 3
Published: over 3 years ago
10.1186/2049-2618-2-23
Characterization of the vaginal microbiota of healthy Canadian women through the menstrual cycle
Cited by: 190
Author(s): Bonnie Chaban, Matthew G. Links, Teenus Jayaprakash, Emily Wagner, Danielle K Bourque, Zoe Lohn, Arianne Albert, Julie van Schalkwyk, Gregor Reid, Sean M. Hemmingsen, Janet E. Hill, Deborah Money
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0174175
Building the road to a regional zoonoses strategy: A survey of zoonoses programmes in the Americas
Cited by: 23
Author(s): Melody Maxwell, Mary H. Freire de Carvalho, Armando E. Hoet, Marco Antonio Natal Vigilato, Júlio César Augusto Pompei, Ottorino Cosivi, Victor Del Rio Vilas
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0256286
Classifying California’s stream thermal regimes for cold-water conservation
Cited by: 12
Author(s): Ann Willis, Ryan A. Peek, Andrew L. Rypel
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0074873
Cluster Analysis of Clinical Data Identifies Fibromyalgia Subgroups
Cited by: 50
Author(s): Elisa Docampo, Antonio Collado, Geòrgia Escaramís, Jordi Carbonell, Javier Rivera, Julie Vidal, José Alegre, Raquel Rabionet, Xavier Estivill
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0172049
Discovery of temporal and disease association patterns in condition-specific hospital utilization rates
Cited by: 10
Author(s): Julian Haimovich, Arjun K. Venkatesh, Abbas Shojaee, Andreas Coppi, Frederick Warner, Shuxia Li, Harlan M. Krumholz
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0135620
A Study of the Vaginal Microbiome in Healthy Canadian Women Utilizing cpn60-Based Molecular Profiling Reveals Distinct Gardnerella Subgroup Community State Types
Cited by: 90
Author(s): Arianne Albert, Bonnie Chaban, Emily Wagner, John Schellenberg, Matthew G. Links, Julie van Schalkwyk, Gregor Reid, Sean M. Hemmingsen, Janet E. Hill, Deborah Money
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0122811
Extending the Functionality of Behavioural Change-Point Analysis with k-Means Clustering: A Case Study with the Little Penguin (Eudyptula minor)
Cited by: 32
Author(s): Jingjing Zhang, Kathleen O’Reilly, George L. Perry, Graeme A. Taylor, Todd E. Dennis
Software Mentions: 3
Published: over 9 years ago
10.3389/frai.2021.642505
Reduction of Survey Sites in Dialectology: A New Methodology Based on Clustering
Cited by: 2
Author(s): Péter Jeszenszky, Carina Steiner, Adrian Leemann
Software Mentions: 3
Published: over 3 years ago
10.3389/fimmu.2020.01218
Pan-Cancer Analysis of Immune Cell Infiltration Identifies a Prognostic Immune-Cell Characteristic Score (ICCS) in Lung Adenocarcinoma
Cited by: 102
Author(s): Shuguang Zuo, Min Wei, Shiqun Wang, Jie Dong, Jiwu Wei
Software Mentions: 3
Published: over 4 years ago
10.3389/fonc.2018.00032
Genetic Alterations in Essential Thrombocythemia Progression to Acute Myeloid Leukemia: A Case Series and Review of the Literature
Cited by: 7
Author(s): Jackline de Paula Ayres‐Silva, Martín Bonamino, Maria Emmerick Gouveia, Bárbara Monte-Mór, Diego F. Coutinho, Adelmo Daumas, Cristiana Solza, Esteban Braggio, Ilana Zalcberg
Software Mentions: 3
Published: almost 7 years ago
10.3389/fpsyg.2016.00558
Comprehending Adverbs of Doubt and Certainty in Health Communication: A Multidimensional Scaling Approach
Cited by: 7
Author(s): Norman Segalowitz, Marina M. Doucerain, Renata Meuter, Yue Zhao, Julia Hocking, Andrew G. Ryder
Software Mentions: 3
Published: over 8 years ago
10.1093/gigascience/giz058
Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation
Cited by: 103
Author(s): Kun Zuo, Jing Li, Kuibao Li, Chaowei Hu, Yuanfeng Gao, Mulei Chen, Roumu Hu, Ye Liu, Hongjie Chi, Hongjiang Wang, Yanwen Qin, Xiaoyan Liu, Shichao Li, Jun Cai, Jiu-Chang Zhong, Xinchun Yang
Software Mentions: 3
Published: over 5 years ago
10.1073/pnas.1811661116
Chloroplast competition is controlled by lipid biosynthesis in evening primroses
Cited by: 32
Author(s): Johanna Sobanski, Patrick Giavalisco, Axel Fischer, Julia M. Kreiner, Dirk Walther, Mark Aurel Schöttler, Tommaso Pellizzer, Hieronim Golczyk, Toshihiro Obata, Ralph Bock, Barbara B. Sears, Stephan Greiner
Software Mentions: 3
Published: almost 6 years ago
10.3390/ani10122452
Description of Behavioral Patterns Displayed by a Recently Weaned Cohort of Healthy Dairy Calves
Cited by: 2
Author(s): J. I. Alawneh, Michelle Barreto, Kealeboga Bome, Martin Soust
Software Mentions: 3
Published: about 4 years ago
10.1093/geronb/gbx066
Late Life Employment Histories and Their Association With Work and Family Formation During Adulthood: A Sequence Analysis Based on ELSA
Cited by: 23
Author(s): Morten Wahrendorf, Paola Zaninotto, Hanno Hoven, Jenny Head, Ewan Carr
Software Mentions: 3
Published: over 7 years ago
10.3390/jcm9010063
Kinetics of Tear Fluid Proteins after Endothelial Keratoplasty and Predictive Factors for Recovery from Corneal Haze
Cited by: 4
Author(s): Nobuyo Yawata, Sunita Awate, Yu Chi Liu, Yuan Shi, Kaing Woon, Jay Siak, Y. Kawano, Koh Hei Sonoda, Jodhbir S. Mehta, Makoto Yawata
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmicb.2019.00843
Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes
Cited by: 4
Author(s): Marisa O.D. Silva, Peter Desmond, Nicolas Derlon, Eberhard Morgenroth, Jakob Pernthaler
Software Mentions: 2
Published: over 5 years ago
10.3389/fnhum.2017.00007
Relationship between Self-Administered Cues and Rehabilitation Outcomes in Individuals with Aphasia: Understanding Individual Responsiveness to a Technology-Based Rehabilitation Program
Cited by: 9
Author(s): Carrie Des Roches, Annette Mitko, Swathi Kıran
Software Mentions: 2
Published: almost 8 years ago
10.3389/fcimb.2016.00179
Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling
Cited by: 99
Author(s): Andrew Maltez Thomas, Eliane C. Jesus, Ademar Lopes, Samuel Aguiar, Maria D. Begnami, Rafael Malagoli Rocha, Paola A. Carpinetti, Anamaria A. Camargo, Christian Hoffmann, Helano C. Freitas, Israel Tojal da Silva, Diana Noronha Nunes, João Carlos Setúbal, Emmanuel Dias‐Neto
Software Mentions: 2
Published: about 8 years ago
10.1038/s41598-018-33110-w
Potential identification of vitamin B6 responsiveness in autism spectrum disorder utilizing phenotype variables and machine learning methods
Cited by: 16
Author(s): Taku Obara, Mami Ishikuro, Gen Tamiya, Masao Ueki, Chizuru Yamanaka, Satoshi Mizuno, Masahiro Kikuya, Hirohito Metoki, Hiroko Matsubara, Masato Nagai, Tomoko Kobayashi, Machiko Kamiyama, M Watanabe, Kazuhiko Kakuta, Minami Ouchi, Akiko Kurihara, Naru Fukuchi, Akihiro Yasuhara, Masumi Inagaki, Makiko Kaga, Shigeo Kure, Shinichi Kuriyama
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-019-45874-w
Geographical assignment of polar bears using multi-element isoscapes
Cited by: 13
Author(s): Geoff Koehler, Kevin J. Kardynal, Keith A. Hobson
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0115650
Comparing Multiple Criteria for Species Identification in Two Recently Diverged Seabirds
Cited by: 10
Author(s): Teresa Militão, Elena Gómez-Díaz, Antigoni Kaliontzopoulou, Jacob González‐Solís
Software Mentions: 2
Published: almost 10 years ago
10.1186/1471-2105-15-92
DAFS: a data-adaptive flag method for RNA-sequencing data to differentiate genes with low and high expression
Cited by: 22
Author(s): Nysia I. George, Ching‐Wei Chang
Software Mentions: 2
Published: over 10 years ago
10.1186/s13023-021-01741-4
RDmap: a map for exploring rare diseases
Cited by: 14
Author(s): Jian Yang, Chengyan Dong, Huilong Duan, Qiang Shu, Haomin Li
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12874-020-0902-x
A computational method to quantitatively measure pediatric drug safety using electronic medical records
Cited by: 0
Author(s): Gang Yu, Xian Zeng, Shuang Ni, Zheng Jia, Weihong Chen, Xudong Lü, Jiye An, Huilong Duan, Qiang Shu, Haomin Li
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12877-018-0705-7
Multimorbidity patterns in the elderly: a prospective cohort study with cluster analysis
Cited by: 80
Author(s): Marina Guisado-Clavero, Albert Roso-Llorach, Tomás López-Jiménez, Mariona Pons‐Vigués, Quintí Foguet-Boreu, Miguel Ángel Muñoz, Concepción Violán
Software Mentions: 2
Published: almost 7 years ago
10.3389/fpsyt.2018.00191
An Examination of the Multi-Faceted Motivation System in Healthy Young Adults
Cited by: 4
Author(s): Susana Da Silva, Areti Apatsidou, Sarah Saperia, Ishraq Siddiqui, Eliyas Jeffay, Aristotle N. Voineskos, Zafiris J. Daskalakis, Gary Remington, Konstantine K. Zakzanis, George Foussias
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0241013
Using the situational characteristics of the DIAMONDS taxonomy to distinguish sports to more precisely investigate their relation with psychologically relevant variables
Cited by: 2
Author(s): Sophia Terwiel, John F. Rauthmann, Maike Luhmann
Software Mentions: 1
Published: about 4 years ago
10.1186/1471-2105-8-291
Portraits of breast cancer progression
Cited by: 37
Author(s): Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot
Software Mentions: 1
Published: over 17 years ago
10.3389/fneur.2021.701946
Neuropsychological Assessments of Patients With Acquired Brain Injury: A Cluster Analysis Approach to Address Heterogeneity in Web-Based Cognitive Rehabilitation
Cited by: 2
Author(s): Alejandro García-Rudolph, Alberto García-Molina, Eloy Opisso, J. Tormos, Vince I. Madai, Dietmar Frey, Montserrat Bernabeu
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0123103
Evidence for Patterns of Selective Urban Migration in the Greater Indus Valley (2600-1900 BC): A Lead and Strontium Isotope Mortuary Analysis
Cited by: 41
Author(s): Benjamin Valentine, George D. Kamenov, Jonathan Mark Kenoyer, Vasant Shinde, Veena Mushrif-Tripathy, Erik Otárola‐Castillo, John Krigbaum
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pbio.0050167
Comparison of C. elegans and C. briggsae Genome Sequences Reveals Extensive Conservation of Chromosome Organization and Synteny
Cited by: 164
Author(s): LaDeana W. Hillier, Raymond D. Miller, Scott Everet Baird, Asif T. Chinwalla, Lucinda A. Fulton, Daniel C. Koboldt, Robert H. Waterston
Software Mentions: 1
Published: over 17 years ago
10.1038/tp.2015.112
A common molecular signature in ASD gene expression: following Root 66 to autism
Cited by: 21
Author(s): Leticia Díaz-Beltrán, Francisco J. Esteban, Dennis P. Wall
Software Mentions: 1
Published: almost 9 years ago
10.1002/ece3.7621
Linking behavioral states to landscape features for improved conservation management
Cited by: 3
Author(s): Maitreyi Sur, Brian Woodbridge, Todd C. Esque, James R. Belthoff, Peter H. Bloom, Robert N. Fisher, Kathleen M. Longshore, Kenneth E. Nussear, Jeff A. Tracey, Melissa A. Braham, Todd E. Katzner
Software Mentions: 1
Published: over 3 years ago
10.1111/tpj.12550
Whole‐genome profiling and shotgun sequencing delivers an anchored, gene‐decorated, physical map assembly of bread wheat chromosome 6A
Cited by: 41
Author(s): Naser Poursarebani, Thomas Nußbaumer, Hana Šimková, Jan Šafář, H. Witsenboer, Jan van Oeveren, Jaroslav Doležel, Klaus Mayer, Nils Stein, Thorsten Schnurbusch
Software Mentions: 1
Published: over 10 years ago
10.1186/s12864-015-1404-9
Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling
Cited by: 19
Author(s): Trevor W. Rife, Shuangye Wu, Robert L. Bowden, Jesse Poland
Software Mentions: 1
Published: over 9 years ago
10.1002/ece3.5953
Selection and plasticity both account for interannual variation in life‐history phenology in an annual prairie legume
Cited by: 2
Author(s): Amber R. Nashoba, Thomas J. Y. Kono
Software Mentions: 1
Published: almost 5 years ago
10.1186/gb-2008-9-9-r139
Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues
Cited by: 258
Author(s): Sami Kilpinen, Reija Autio, K. Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf Inge Skotheim, Mari Björkman, John Patrick Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi
Software Mentions: 1
Published: almost 17 years ago
10.3389/fpsyg.2016.00980
Zebra Finch Song Phonology and Syntactical Structure across Populations and Continents—A Computational Comparison
Cited by: 37
Author(s): Robert F. Lachlan, Caroline A. A. van Heijningen, Sita M. ter Haar, Carel ten Cate
Software Mentions: 1
Published: over 8 years ago