Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02042-y

https://doi.org/10.1186/s13059-020-02042-y

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Cited by: 60
Author(s): Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun Huang, Adrian Tett, Serena Manara, Federica Armanini, D. J. G. Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Vallès-Colomer, Roberta Raffaetà, Omar Rota‐Stabelli, María Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Published: over 4 years ago

Software Mentions 6

cran: fpc
Flexible Procedures for Clustering
Papers that mentioned: 99
cran: geosphere
Spherical Trigonometry
Papers that mentioned: 112
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: centrifuge
Simple real-time messaging in web applications
Papers that mentioned: 4
pypi: dbcan
Standalone version of dbCAN annotation tool for automated CAZyme annotation
Papers that mentioned: 11
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144