Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: centrifuge
https://packages.ecosyste.ms/registries/pypi.org/packages/centrifuge
Simple real-time messaging in web applications
54 versions
Latest release: about 9 years ago
404 downloads last month
Papers Mentioning centrifuge 4
10.1371/journal.pcbi.1008716
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)Cited by: 14
Author(s): Renaud Van Damme, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam‐Rudloff, Christian Brandt
Software Mentions: 8
Published: almost 4 years ago
10.1186/s13059-020-02042-y
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptationsCited by: 60
Author(s): Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun Huang, Adrian Tett, Serena Manara, Federica Armanini, D. J. G. Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Vallès-Colomer, Roberta Raffaetà, Omar Rota‐Stabelli, María Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Software Mentions: 6
Published: over 4 years ago
10.3390/microorganisms9071427
How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?—A Study by 16S-RNA SequencingCited by: 3
Author(s): Ali Al‐Ahmad, Kira Wollensak, Sibylle J. Rau, Diana Lorena Guevara Solarte, Stefan Paschke, Karen Lienkamp, Ori Staszewski
Software Mentions: 5
Published: over 3 years ago
10.1080/22221751.2020.1807411
Precise diagnosis of <i>Neisseria macacae</i> infective endocarditis assisted by nanopore sequencingCited by: 4
Author(s): Jingwen Ai, Hong Liu, Huixia Li, Qingxia Ling, Yan-Qin Ai, Sijia Sun, Xuan Wang, Bingyan Zhang, Jianming Zheng, Jialin Jin, Wenhong Zhang
Software Mentions: 1
Published: almost 5 years ago