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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pcbi.1008716

https://doi.org/10.1371/journal.pcbi.1008716

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)

Cited by: 14
Author(s): Renaud Van Damme, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam‐Rudloff, Christian Brandt
Published: over 4 years ago

Software Mentions 8

pypi: centrifuge
Simple real-time messaging in web applications
Papers that mentioned: 4
Likely Science (55)
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
Very Likely Science (100)
pypi: eggnog-mapper
Fast functional annotation of novel sequences using eggNOG orthology assignments.
Papers that mentioned: 41
Very Likely Science (80)
pypi: medaka
Neural network sequence error correction.
Papers that mentioned: 15
Very Likely Science (95)
pypi: muffin
Muffin is a fast, simple and asyncronous web-framework for Python 3 (asyncio, trio, curio)
Papers that mentioned: 1
Very Likely Science (65)
pypi: nextflow
A Python wrapper that installs the Nextflow launcher
Papers that mentioned: 9
Very Likely Science (80)
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
Very Likely Science (90)
pypi: sourmash
tools for comparing biological sequences with k-mer sketches
Papers that mentioned: 10
Very Likely Science (100)