Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: nextflow
https://packages.ecosyste.ms/registries/pypi.org/packages/nextflow
A Python wrapper that installs the Nextflow launcher
22 versions
Latest release: 11 months ago
1 dependent package
523 downloads last month
Papers Mentioning nextflow 9
10.3389/fmicb.2020.550420
Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing PipelineCited by: 91
Author(s): Daniel Straub, Nia Blackwell, Adrian Langarica‐Fuentes, Alexander Peltzer, Sven Nahnsen, Sara Kleindienst
Software Mentions: 22
Published: almost 4 years ago
10.12688/f1000research.15140.2
Recommendations for the packaging and containerizing of bioinformatics softwareCited by: 32
Author(s): Bjoern Gruening, Olivier Sallou, Pablo Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes L. Röst, Timo Sachsenberg, Brian D. O’Connor, Fábio Madeira, Victoria Domínguez Del Angel, Michael R. Crusoe, Susheel Varma, Daniel Blankenberg, Rafael C. Jiménez, BioContainers Community, Yasset Perez‐Riverol
Software Mentions: 14
Published: over 5 years ago
10.1371/journal.pcbi.1008716
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)Cited by: 14
Author(s): Renaud Van Damme, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam‐Rudloff, Christian Brandt
Software Mentions: 8
Published: over 3 years ago
10.1186/s40168-019-0684-8
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific languageCited by: 38
Author(s): Luís Pedro Coelho, Renato Alves, Paulo P. Monteiro, Jaime Huerta-Cepas, Ana T. Freitas, Peer Bork
Software Mentions: 7
Published: over 5 years ago
10.1074/mcp.RA120.002036
Immediate Adaptation Analysis Implicates BCL6 as an EGFR-TKI Combination Therapy Target in NSCLCCited by: 9
Author(s): Yan Zhou Tran, Rezan Minozada, Xiaofang Cao, Henrik J. Johansson, Rui M. Branca, Brinton Seashore‐Ludlow, Lukas M. Orre
Software Mentions: 6
Published: over 4 years ago
10.7717/peerj.10897
Bioinformatic strategies for the analysis of genomic aberrations detected by targeted NGS panels with clinical applicationCited by: 4
Author(s): Jakub Hynšt, Veronika Navrkalová, Karol Pál, Šárka Pospı́šilová
Software Mentions: 5
Published: over 3 years ago
10.1186/s12859-019-3219-1
uap: reproducible and robust HTS data analysisCited by: 12
Author(s): Christoph Kämpf, Michael Specht, Alexander Scholz, Sven-Holger Puppel, Gero Doose, Kristin Reiche, Jana Schor, Jörg Hackermüller
Software Mentions: 5
Published: almost 5 years ago
10.1093/bib/bbaa232
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus researchCited by: 99
Author(s): Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Alex Bateman, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F Löchel, Marı́a Jesús Martı́n, Roman Martin, Julian Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine O’Toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Piñeros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pbio.3000535
Enhanced translation expands the endo-lysosome size and promotes antigen presentation during phagocyte activationCited by: 42
Author(s): Victoria E. B. Hipolito, Jacqueline A. Diaz, Kristofferson Tandoc, Christian Oertlin, Johannes Ristau, Neha Chauhan, Amra Sarić, Shannon McLaughlan, Ola Larsson, Ivan Topisirović, Roberto J. Botelho
Software Mentions: 2
Published: almost 5 years ago