Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2020.550420

https://doi.org/10.3389/fmicb.2020.550420

Cited by: 91
Author(s): Daniel Straub, Nia Blackwell, Adrian Langarica‐Fuentes, Alexander Peltzer, Sven Nahnsen, Sara Kleindienst
Published: over 3 years ago

Software Mentions 22

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: FactoMineR
Multivariate Exploratory Data Analysis and Data Mining
Papers that mentioned: 1,101
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: uclust
Clustering and Classification Inference with U-Statistics
Papers that mentioned: 454
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: demux
Application for demultiplexing sequence data
Papers that mentioned: 37
pypi: Extreme
It's just a name snipe.
Papers that mentioned: 277
pypi: hpc

Papers that mentioned: 1
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: nextflow
A Python wrapper that installs the Nextflow launcher
Papers that mentioned: 9
pypi: nf-core
Helper tools for use with nf-core Nextflow pipelines.
Papers that mentioned: 18
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: singularity
command line tools for visualization and analysis of singularity containers.
Papers that mentioned: 5
pypi: Swarm
Swarm is a strategy rouge-like space simulator game written with `pygame/python3`.
Papers that mentioned: 151