Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-019-0684-8

https://doi.org/10.1186/s40168-019-0684-8

NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

Cited by: 38
Author(s): Luís Pedro Coelho, Renato Alves, Paulo P. Monteiro, Jaime Huerta-Cepas, Ana T. Freitas, Peer Bork
Published: over 5 years ago

Software Mentions 7

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: eggnog-mapper
Fast functional annotation of novel sequences using eggNOG orthology assignments.
Papers that mentioned: 41
pypi: nextflow
A Python wrapper that installs the Nextflow launcher
Papers that mentioned: 9
pypi: salmon
A simple metric collector with alerts.
Papers that mentioned: 36