Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-019-3219-1

https://doi.org/10.1186/s12859-019-3219-1

uap: reproducible and robust HTS data analysis

Cited by: 12
Author(s): Christoph Kämpf, Michael Specht, Alexander Scholz, Sven-Holger Puppel, Gero Doose, Kristin Reiche, Jana Schor, Jörg Hackermüller
Published: almost 5 years ago

Software Mentions 5

pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Papers that mentioned: 43
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: nextflow
A Python wrapper that installs the Nextflow launcher
Papers that mentioned: 9