Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.15140.2

https://doi.org/10.12688/f1000research.15140.2

Cited by: 32
Author(s): Bjoern Gruening, Olivier Sallou, Pablo Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes L. Röst, Timo Sachsenberg, Brian D. O’Connor, Fábio Madeira, Victoria Domínguez Del Angel, Michael R. Crusoe, Susheel Varma, Daniel Blankenberg, Rafael C. Jiménez, BioContainers Community, Yasset Perez‐Riverol
Published: about 5 years ago

Software Mentions 14

cran: apt
Asymmetric Price Transmission
Papers that mentioned: 8
cran: yum
Utilities to Extract and Process 'YAML' Fragments
Papers that mentioned: 2
pypi: apt
Python bindings for libapt.
Papers that mentioned: 8
pypi: Comet
VOEvent Broker
Papers that mentioned: 248
pypi: cwl
Common Workflow Language Command Line Interface
Papers that mentioned: 1
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: nextflow
A Python wrapper that installs the Nextflow launcher
Papers that mentioned: 9
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pip
The PyPA recommended tool for installing Python packages.
Papers that mentioned: 21
pypi: py2bit
A package for accessing 2bit files using lib2bit
Papers that mentioned: 1
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: wget
pure python download utility
Papers that mentioned: 43