Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: dbcan

https://packages.ecosyste.ms/registries/pypi.org/packages/dbcan

Standalone version of dbCAN annotation tool for automated CAZyme annotation
6 versions
Latest release: over 2 years ago
45 downloads last month

Papers Mentioning dbcan 11

Assembly of hundreds of novel bacterial genomes from the chicken caecum
Cited by: 95
Author(s): Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie Watson, Mick Watson
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13059-020-02042-y

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Cited by: 60
Author(s): Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun Huang, Adrian Tett, Serena Manara, Federica Armanini, D. J. G. Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Vallès-Colomer, Roberta Raffaetà, Omar Rota‐Stabelli, María Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Software Mentions: 6
Published: over 4 years ago

10.1038/s41396-021-00987-x

Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria
Cited by: 14
Author(s): François Thomas, Nolwen Le Duff, Ting-Di Wu, Aurélie Cébron, Stéphane Uroz, Pascal Riera, Cédric Leroux, Gwenn Tanguy, Erwan Legeay, Jean‐Luc Guerquin‐Kern
Software Mentions: 6
Published: over 3 years ago

10.1038/s42003-021-02510-6

Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach
Cited by: 9
Author(s): Yu-Hsiang Chen, Pei‐Wen Chiang, D. Yu. Rogozin, Andrey G. Degermendzhy, Hsiu‐Hui Chiu, Sen‐Lin Tang
Software Mentions: 3
Published: about 3 years ago

10.1186/s13059-021-02408-w

Revealing the full biosphere structure and versatile metabolic functions in the deepest ocean sediment of the Challenger Deep
Cited by: 19
Author(s): Ping Chen, Haihua Zhou, Yanyan Huang, Zhe Xie, Mengjie Zhang, Yuli Wei, Jia Li, Yuewei Ma, Min Luo, Wenmian Ding, Junwei Cao, Tao Jiang, Nan Peng, Jiasong Fang, Xuan Li
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.03088

“CATAStrophy,” a Genome-Informed Trophic Classification of Filamentous Plant Pathogens – How Many Different Types of Filamentous Plant Pathogens Are There?
Cited by: 34
Author(s): James K. Hane, Jonathan Paxman, Darcy A. B. Jones, Richard P. Oliver, P.J.G.M. de Wit
Software Mentions: 2
Published: almost 5 years ago

10.3390/jof7060464

Comparative Genomics Used to Predict Virulence Factors and Metabolic Genes among Monilinia Species
Cited by: 10
Author(s): Marina Marcet‐Houben, M. Villarino, Laura Vilanova, Antonieta De Cal, Jan A.L. van Kan, J. Usall, Toni Gabaldón, R. Torres
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8081101

Selection of Exopolysaccharide-Producing Lactobacillus Plantarum (Lactiplantibacillus Plantarum) Isolated from Algerian Fermented Foods for the Manufacture of Skim-Milk Fermented Products
Cited by: 17
Author(s): Nadia Bachtarzi, Immacolata Speciale, Karima Kharroub, Cristina De Castro, Lorena Ruíz, Patricia Rúas-Madiedo
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0247822

Bagasse minority pathway expression: Real time study of GH2 β-mannosidases from bacteroidetes
Cited by: 2
Author(s): Tatiane Fernanda Leonel, Elisângela Soares Gomes Pepe, Tereza Cristina Luque Castellane, Juliana da Silva Vantini, Michelli Inácio Gonçalves Funnicelli, Eliana Gertrudes de Macedo Lemos
Software Mentions: 1
Published: over 3 years ago

10.1128/genomeA.01587-16

Draft Genome Sequence of Actinomyces succiniciruminis Strain Am4 T , Isolated from Cow Rumen Fluid
Cited by: 1
Author(s): Susakul Palakawong Na Ayudthaya, Bastian Hornung, Adithi R. Varadarajan, Wendy Plugge, Caroline M. Plugge
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-2200-2

Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts
Cited by: 15
Author(s): Chai Ling Chan, Su Mei Yew, Yun Fong Ngeow, Shiang Ling Na, Kok Wei Lee, Chee-Choong Hoh, Wai-Yan Yee, Kee Peng Ng
Software Mentions: 1
Published: about 9 years ago