Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-020-1947-1
https://doi.org/10.1186/s13059-020-1947-1
Assembly of hundreds of novel bacterial genomes from the chicken caecum
Cited by: 95
Author(s): Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie Watson, Mick Watson
Published: almost 5 years ago
Software Mentions 6
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and PermutationsPapers that mentioned: 6,292
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting SetsPapers that mentioned: 319
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
pypi: dbcan
Standalone version of dbCAN annotation tool for automated CAZyme annotationPapers that mentioned: 11