An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13073-020-00823-5

https://doi.org/10.1186/s13073-020-00823-5

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients

Cited by: 169
Author(s): Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos, Melanie Nuesch-Germano, Konstantina Gkizeli, Lorenzo Bonaguro, Nico Reusch, Kevin Baßler, Maria Saridaki, Rainer Knoll, Tal Pecht, Theodore S. Kapellos, Sarandia Doulou, Charlotte Kröger, Miriam Herbert, Lisa Holsten, Arik Horne, Ioanna Gemünd, Nikoletta Rovina, Shobhit Agrawal, K. Dahm, Martina van Uelft, Anna Drews, Lena Lenkeit, Niklas Bruse, Jelle Gerretsen, Jannik Gierlich, Matthias Becker, Kristian Händler, Michael Kraut, Heidi Theis, Simachew Abebe Mengiste, Elena De Domenico, Jonas Schulte-Schrepping, Lea Seep, Jan Raabe, Christoph Hoffmeister, Michael ToVinh, Verena Keitel, Gereon J Rieke, Valentina Talevi, Dirk Skowasch, N. Ahmad Aziz, Peter Pickkers, Frank L. van de Veerdonk, Mihai G. Netea, Joachim L. Schultze, Matthijs Kox, Monique M.B. Breteler, Jacob Nattermann, Antonia Koutsoukou, Evangelos J. Giamarellos‐Bourboulis, Thomas Ulas
Published: over 4 years ago

Software Mentions 13

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
cran: fpc
Flexible Procedures for Clustering
Papers that mentioned: 99
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: wordcloud
Word Clouds
Papers that mentioned: 39
Very Likely Science (75)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: wordcloud
A little word cloud generator
Papers that mentioned: 39
Very Likely Science (100)