Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1002/1878-0261.12117

https://doi.org/10.1002/1878-0261.12117

Cited by: 37
Author(s): Xianglong Tian, Xiaoqiang Zhu, Tingting Yan, Chuangqi Yu, Chaoqin Shen, Ye Hu, Jie Hong, Haoyan Chen, Jing‐Yuan Fang
Published: over 6 years ago

Software Mentions 11

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
Papers that mentioned: 36
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: rms
Regression Modeling Strategies
Papers that mentioned: 1,236
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893