bioconductor: affycoretools | Projects

10.1007/s12032-017-0963-9

The identification of key genes and pathways in hepatocellular carcinoma by bioinformatics analysis of high-throughput data
Cited by: 107
Author(s): Chaoyang Zhang, Li Peng, Yaqin Zhang, Zhaoyang Liu, Wenling Li, Shilian Chen, Guancheng Li
Software Mentions: 12
Published: about 7 years ago

10.1371/journal.pone.0041169

Global Transcriptome Analysis in Influenza-Infected Mouse Lungs Reveals the Kinetics of Innate and Adaptive Host Immune Responses
Cited by: 93
Author(s): Claudia Pommerenke, Esther Wilk, Barkha Srivastava, Annika Schulze, Natalia Novoselova, Robert Geffers, Klaus Schughart
Software Mentions: 11
Published: almost 12 years ago

10.1002/1878-0261.12117

Recurrence-associated gene signature optimizes recurrence-free survival prediction of colorectal cancer
Cited by: 37
Author(s): Xianglong Tian, Xiaoqiang Zhu, Tingting Yan, Chuangqi Yu, Chaoqin Shen, Ye Hu, Jie Hong, Haoyan Chen, Jing‐Yuan Fang
Software Mentions: 11
Published: over 6 years ago

10.1371/journal.pone.0224750

Gene expression microarray public dataset reanalysis in chronic obstructive pulmonary disease
Cited by: 3
Author(s): Lavida R. K. Rogers, Madison Verlinde, George I. Mias
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-019-46168-x

Cytotoxic unsaturated electrophilic compounds commonly target the ubiquitin proteasome system
Cited by: 16
Author(s): Karthik Selvaraju, Arjan Mofers, Paola Pellegrini, Johannes Salomonsson, Alexandra Ahlner, Vivian Morad, Ellin-Kristina Hillert, Belén Espinosa, Elias S.J. Arnér, Lasse Jensen, Jonas Malmström, Maria V. Turkina, Pádraig D’Arcy, Michael A. Walters, Maria Sunnerhagen, Stig Linder
Software Mentions: 10
Published: almost 5 years ago

10.7717/peerj.1845

A molecular classification of human mesenchymal stromal cells
Cited by: 42
Author(s): Florian Rohart, Elizabeth A. Mason, Nicholas Matigian, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Suzanne Butcher, Jatin Patel, Kerry Atkinson, Kiarash Khosrotehrani, Nicholas M. Fisk, Kim‐Anh Lê Cao, Christine A. Wells
Software Mentions: 10
Published: about 8 years ago

10.3389/fnbeh.2019.00036

Prolonged Bat Call Exposure Induces a Broad Transcriptional Response in the Male Fall Armyworm (Spodoptera frugiperda; Lepidoptera: Noctuidae) Brain
Cited by: 13
Author(s): Scott D Cinel, Steven J. Taylor
Software Mentions: 9
Published: about 5 years ago

10.18632/aging.103707

A 12-immune cell signature to predict relapse and guide chemotherapy for stage II colorectal cancer
Cited by: 4
Author(s): Xianglong Tian, Xiaoqiang Zhu, Meng Wu, Shiguang Bai, Min Shi, Shihao Xiang, Zhao Chun-hua, Yugang Wang
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-021-93034-w

Altered expression of genes controlling metabolism characterizes the tissue response to immune injury in lupus
Cited by: 20
Author(s): Kathryn M. Kingsmore, Prathyusha Bachali, Michelle D. Catalina, Andrea R. Daamen, Sarah Heuer, Robert Robl, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 8
Published: almost 3 years ago

10.7150/ijms.48244

Identification of Key Genes and Pathways in Myeloma side population cells by Bioinformatics Analysis
Cited by: 21
Author(s): Yang Qin, Kaihu Li, Xin Li, Jing Liu
Software Mentions: 8
Published: over 4 years ago

10.3389/fimmu.2019.02616

Microarray Gene Expression Dataset Re-analysis Reveals Variability in Influenza Infection and Vaccination
Cited by: 12
Author(s): Lavida R. K. Rogers, Gustavo de los Campos, George I. Mias
Software Mentions: 7
Published: over 4 years ago

10.3389/fimmu.2020.606338

Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses
Cited by: 33
Author(s): Christoph Ruschil, Gisela Gabernet, Gildas Lepennetier, Simon Heumos, Miriam Kaminski, Zsuzsanna Hracskó, Martin Irmler, Johannes Beckers, Ulf Ziemann, Sven Nahnsen, Gregory P. Owens, Jeffrey L. Bennett, Bernhard Hemmer, Markus C. Kowarik
Software Mentions: 6
Published: over 3 years ago

10.1186/1743-422X-11-126

Reactive astrogliosis in response to hemorrhagic fever virus: microarray profile of Junin virus-infected human astrocytes
Cited by: 8
Author(s): Olga A. Kolokoltsova, Nadezhda E. Yun, Slobodan Paessler
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pone.0208132

Identification of alterations in macrophage activation associated with disease activity in systemic lupus erythematosus
Cited by: 67
Author(s): Adam C. Labonte, Brian Kegerreis, Nicholas S. Geraci, Prathyusha Bachali, Sushma Madamanchi, Robert Robl, Michelle D. Catalina, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-016-2483-y

Influenza H3N2 infection of the collaborative cross founder strains reveals highly divergent host responses and identifies a unique phenotype in CAST/EiJ mice
Cited by: 43
Author(s): Sarah R. Leist, Carolin Pilzner, Judith M. A. van den Brand, Leonie Dengler, Robert Geffers, Thijs Kuiken, Rudi Balling, Heike Kollmus, Klaus Schughart
Software Mentions: 6
Published: about 8 years ago

10.7150/ijbs.32899

A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2164-10-270

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events
Cited by: 110
Author(s): Sônia Sousa Melo Cavalcanti de Albuquerque, Céline Carret, Ana Rita Grosso, Alice S. Tarun, Xinxia Peng, Stefan H. I. Kappe, Miguel Prudêncio, Maria M. Mota
Software Mentions: 6
Published: almost 15 years ago

10.1186/s12974-020-1706-y

Neonatal hypoxia-ischemia in rat elicits a region-specific neurotrophic response in SVZ microglia
Cited by: 14
Author(s): Urs Fisch, Catherine Brégère, Florian Geier, Laurie Chicha, Raphael Guzman
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pbio.2002940

The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity
Cited by: 46
Author(s): Rukeia El-Athman, Nikolaï Genov, J Mazùch, Kaiyang Zhang, Yong A. Yu, Luise Fuhr, Marconi Abreu, Yin Li, Thomas Wallach, Achim Kramer, Clemens A. Schmitt, Angela Relógio
Software Mentions: 5
Published: over 6 years ago

10.3390/cancers11010053

Prognostic Gene Discovery in Glioblastoma Patients using Deep Learning
Cited by: 34
Author(s): Kelvin Wong, Robert Rostomily, Stephen T.C. Wong
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2105-14-263

Ontology based molecular signatures for immune cell types via gene expression analysis
Cited by: 12
Author(s): Terrence F. Meehan, Nicole Vasilevsky, Christopher J. Mungall, David S. Dougall, Melissa A. Haendel, Judith A. Blake, Alexander D. Diehl
Software Mentions: 5
Published: over 10 years ago

10.1111/eva.12278

Patterns of differential gene expression in adult rotation‐resistant and wild‐type western corn rootworm digestive tracts
Cited by: 10
Author(s): Chia‐Ching Chu, Jorge A. Zavala, Joseph L. Spencer, M. Curzi, Christopher J. Fields, Jenny Drnevich, Blair D. Siegfried, Manfredo J. Seufferheld
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.6848

Leptin-a mediates transcription of genes that participate in central endocrine and phosphatidylinositol signaling pathways in 72-hour embryonic zebrafish (<i>Danio rerio</i>)
Cited by: 5
Author(s): Matthew Tuttle, Mark Dalman, Qin Liu, Richard L. Londraville
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2164-11-674

Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar
Cited by: 69
Author(s): Oľga Pecháňová, Chuan-Yu Hsu, J. F. Adams, Tibor Pechan, Lindsay Vandervelde, Jenny Drnevich, Sara Jawdy, Ardeshir Adeli, Jeffrey C. Suttle, Andrew D. Lawrence, Timothy J. Tschaplinski, Armand Séguin, Çetin Yüceer
Software Mentions: 4
Published: over 13 years ago

10.1186/s12864-017-4086-7

The transcription factor Maf-S regulates metabolic resistance to insecticides in the malaria vector Anopheles gambiae
Cited by: 59
Author(s): Victoria A. Ingham, Patricia Pignatelli, Jonathan D. Moore, Simon C. Wagstaff, Hilary Ranson
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-74947-4

Pancreatic duct ligation reduces premalignant pancreatic lesions in a Kras model of pancreatic adenocarcinoma in mice
Cited by: 4
Author(s): Marta Cáceres, Rita Quesada, Mar Iglesias, Francisco X. Real, María Villamonte, Jaime Martínez de Villarreal, M.E. Ruíz Pérez, Anna Andaluz, Xavier Moll, Enrique Berjano, Dimitri Dorcaratto, Patricia Sánchez-Velázquez, Luís Grande, Fernando Burdı́o
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2164-13-380

The carbon starvation response of Aspergillus niger during submerged cultivation: Insights from the transcriptome and secretome
Cited by: 107
Author(s): Benjamin Nitsche, Tina Jørgensen, Michiel Akeroyd, Vera Meyer, Arthur F. J. Ram
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-020-62516-8

Heterogeneity at the invasion front of triple negative breast cancer cells
Cited by: 13
Author(s): Koh Meng Aw Yong, Peter Ulintz, Sara Cáceres, Xu Cheng, Liwei Bao, Zhifen Wu, Evelyn Jiagge, Sofía D. Merajver
Software Mentions: 3
Published: about 4 years ago

10.3389/fimmu.2020.607175

Mobilized Multipotent Hematopoietic Progenitors Stabilize and Expand Regulatory T Cells to Protect Against Autoimmune Encephalomyelitis
Cited by: 3
Author(s): Sarantis Korniotis, Maud d’Aveni, Sébastien Hergalant, Hélène Letscher, Emmanuel Tejerina, Pauline Gastineau, Viviane A Agbogan, Christophe Gras, Guillemette Fouquet, Julien Rossignol, Jean-Claude Chèvre, Nicolas Cagnard, Marie‐Thérèse Rubio, Olivier Hermine, Flora Zavala
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0031623

Genome Wide Adaptations of Plasmodium falciparum in Response to Lumefantrine Selective Drug Pressure
Cited by: 26
Author(s): Leah Mwai, Abdi Diriye, Victor Masseno, Steven Muriithi, Theresa Feltwell, Jennifer Musyoki, Jacob E. Lemieux, Avi Feller, Gunnar R. Mair, Kevin Marsh, Chris Newbold, Alexis Nzila, Céline Carret
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0116269

Systems Approaches to Predict the Functions of Glycoside Hydrolases during the Life Cycle of Aspergillus niger Using Developmental Mutants ∆brlA and ∆flbA
Cited by: 21
Author(s): Jolanda M. van Munster, Benjamin Nitsche, Michiel Akeroyd, Lubbert Dijkhuizen, Marc J. E. C. van der Maarel, Arthur F. J. Ram
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-74973-2

Gene expression profile of CD14+ blood monocytes following lifestyle-induced weight loss in individuals with metabolic syndrome
Cited by: 3
Author(s): Ronald Biemann, Kirsten Roomp, Nosheen Fatima, Shruthi Krishnan, Zhen Li, K. Shahzad, Katrin Borucki, Claus Luley, Jochen G. Schneider, Berend Isermann
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2020.00199

Molecular Events Controlling Cessation of Trunk Neural Crest Migration and Onset of Differentiation
Cited by: 5
Author(s): Vivian M. Lee, Sergio Hernández, Belle Giang, Chris L. Chabot, Jazmir M. Hernandez, María Elena de Bellard
Software Mentions: 2
Published: about 4 years ago

Ecosyste.ms: Papers

Projects: bioconductor: affycoretools

Papers Mentioning affycoretools 36