Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0041169

https://doi.org/10.1371/journal.pone.0041169

Global Transcriptome Analysis in Influenza-Infected Mouse Lungs Reveals the Kinetics of Innate and Adaptive Host Immune Responses

Cited by: 93
Author(s): Claudia Pommerenke, Esther Wilk, Barkha Srivastava, Annika Schulze, Natalia Novoselova, Robert Geffers, Klaus Schughart
Published: over 12 years ago

Software Mentions 11

bioconductor: affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
Papers that mentioned: 36
bioconductor: annotate
Annotation for microarrays
Papers that mentioned: 36
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysis
Papers that mentioned: 213
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: Cairo
R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) Output
Papers that mentioned: 11
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: psych
Procedures for Psychological, Psychometric, and Personality Research
Papers that mentioned: 1,085
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
pypi: annotate
Decorator to set a function's __annotations__ like Py3.
Papers that mentioned: 36