An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.3390/cells10020322

https://doi.org/10.3390/cells10020322

Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

Cited by: 7
Author(s): Piotr Gawroński, Christel Enroth, Peter Kindgren, Sebastian Marquardt, Stanisław Karpiński, Dario Leister, Poul Erik Jensen, Jeppe Vinther, Lars B. Scharff
Published: over 4 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
Very Likely Science (100)
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
Very Likely Science (60)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
Very Likely Science (95)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
Very Likely Science (100)
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: Fold
A binary encoding scheme (optionally keyed)
Papers that mentioned: 26
Very Likely Science (65)
pypi: PyMOL
Papers that mentioned: 8,266
Very Likely Science (90)
pypi: sh
Python subprocess replacement
Papers that mentioned: 48
Very Likely Science (65)