Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2019.01200

https://doi.org/10.3389/fgene.2019.01200

Cited by: 22
Author(s): Anna Bogucka‐Kocka, Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki
Published: over 4 years ago

Software Mentions 12

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: multiMiR
Integration of multiple microRNA-target databases with their disease and drug associations
Papers that mentioned: 43
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: UNDO
Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions
Papers that mentioned: 5
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: plsVarSel
Variable Selection in Partial Least Squares
Papers that mentioned: 12
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: scatterplot3d
3D Scatter Plot
Papers that mentioned: 69