Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: multiMiR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/multiMiR
Integration of multiple microRNA-target databases with their disease and drug associations
1 version
Latest release: about 1 year ago
1 dependent package
16,797 downloads total
Papers Mentioning multiMiR 43
10.3389/fgene.2019.01200
Dysregulation of MicroRNA Regulatory Network in Lower Extremities Arterial DiseaseCited by: 22
Author(s): Anna Bogucka‐Kocka, Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki
Software Mentions: 12
Published: almost 5 years ago
10.18632/oncotarget.16664
MiRNA profiling of gastrointestinal stromal tumors by next-generation sequencingCited by: 31
Author(s): Ugnė Gyvytė, Simonas Juzėnas, Violeta Šaltenienė, Juozas Kupčinskas, Lina Poškienė, Laimutis Kučinskas, Sonata Jarmalaitė, Kristina Stuopelytė, Rūta Steponaitienė, Georg Hemmrich-Stanisak, Matthias Hübenthal, Alexander Link, Sabine Franke, André Franke, Dalia Pangonytė, Vaiva Lesauskaitė, Limas Kupčinskas, Jurgita Skiecevičienė
Software Mentions: 8
Published: over 7 years ago
10.3389/fnins.2021.689188
Identification of the Potential Gene Regulatory Networks and Therapeutics in Aged Mice With Postoperative Neurocognitive DisorderCited by: 9
Author(s): Wensi Wu, Yongbo Peng, Jiaxin Zhou, Xiaojun Zhang, Lin Cao, Wei-Jye Lin, Yanan Lu, Jing Wen, Zhi Wang
Software Mentions: 8
Published: over 3 years ago
10.3390/jcm9051251
Dysregulations of MicroRNA and Gene Expression in Chronic Venous DiseaseCited by: 12
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 8
Published: over 4 years ago
10.3390/jcm9061974
Dysregulation of microRNA Modulatory Network in Abdominal Aortic AneurysmCited by: 13
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 7
Published: over 4 years ago
10.1186/s12864-019-6110-6
Insight into genetic regulation of miRNA in mouse brainCited by: 4
Author(s): Gordon Kordas, Pratyaydipta Rudra, Audrey E. Hendricks, Laura Saba, Katerina Kechris
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12885-021-08711-w
Construction of a ceRNA network of hub genes affecting immune infiltration in ovarian cancer identified by WGCNACited by: 12
Author(s): Rongjia Su, Chengjuan Jin, Lina Zhou, Yannan Cao, Menghua Kuang, Linxia Li, Jianbin Xiang
Software Mentions: 6
Published: about 3 years ago
10.1038/s41598-019-39220-3
The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome VirusCited by: 9
Author(s): Sophie Dhorne–Pollet, Elisa Crisci, Núria Mach, Patricia Renson, Florence Jaffrézic, Guillemette Marot, Tatiana Maroilley, Marco Moroldo, Jérôme Lecardonnel, Fany Blanc, Nicolas Bertho, Olivier Bourry, Elisabetta Giuffra
Software Mentions: 6
Published: over 5 years ago
10.1186/s12916-020-01898-y
Development and validation of a novel circular RNA as an independent prognostic factor in acute myeloid leukemiaCited by: 9
Author(s): Jinghan Wang, Jiajia Pan, Shujuan Huang, Fenglin Li, Jiansong Huang, Xia Li, Qing Ling, Wenle Ye, Yungui Wang, Wenjuan Yu, Jie Jin
Software Mentions: 5
Published: almost 4 years ago
10.1186/s13195-021-00862-z
Prediction of differentially expressed microRNAs in blood as potential biomarkers for Alzheimer’s disease by meta-analysis and adaptive boosting ensemble learningCited by: 26
Author(s): Sze Chung Yuen, Xueya Liang, Hongmei Zhu, Yongliang Jia, Siu-wai Leung
Software Mentions: 5
Published: over 3 years ago
10.1186/s12967-020-02561-z
Gene correlation network analysis to identify regulatory factors in sepsisCited by: 25
Author(s): Zhongheng Zhang, Lin Chen, Ping Xu, Lifeng Xing, Yucai Hong, Pengpeng Chen
Software Mentions: 5
Published: about 4 years ago
10.1038/srep22932
Integrated mRNA and miRNA expression profiling in blood reveals candidate biomarkers associated with endurance exercise in the horseCited by: 44
Author(s): Núria Mach, Sandra Plancade, Alicja Pacholewska, Jérôme Lecardonnel, Julie Rivière, Marco Moroldo, Anne Vaiman, Caroline Morgenthaler, Marine Beinat, Alizée Nevot, Céline Robert, Éric Barrey
Software Mentions: 5
Published: over 8 years ago
10.1186/s12920-021-00905-2
Bioinformatic analysis reveals an exosomal miRNA-mRNA network in colorectal cancerCited by: 17
Author(s): Jun Ma, Peilong Wang, Lei Huang, Jianxia Qiao, Jianhong Li
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-018-37098-1
Comparison between dopaminergic and non-dopaminergic neurons in the VTA following chronic nicotine exposure during pregnancyCited by: 9
Author(s): Renee F. Keller, Tina Kazemi, Andrei Dragomir, Yasemin M. Akay, Metin Akay
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-018-31882-9
Investigating the genetic profile of dopaminergic neurons in the VTA in response to perinatal nicotine exposure using mRNA-miRNA analysesCited by: 14
Author(s): Renee F. Keller, Andrei Dragomir, Yonggang Fan, Yasemin M. Akay, Metin Akay
Software Mentions: 5
Published: about 6 years ago
10.3390/genes11090983
MicroRNAs Modulate the Pathogenesis of Alzheimer’s Disease: An In Silico Analysis in the Human BrainCited by: 12
Author(s): Agnese Gugliandolo, Luigi Chiricosta, Virginia Boccardi, Patrizia Mecocci, Placido Bramantı, Emanuela Mazzon
Software Mentions: 4
Published: about 4 years ago
10.18632/oncotarget.10052
Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugsCited by: 71
Author(s): Jie Li, Kecheng Lei, Zengrui Wu, Weihua Li, Guixia Liu, Jianwen Liu, Feixiong Cheng, Yun Tang
Software Mentions: 4
Published: over 8 years ago
10.7717/peerj.9812
Using bioinformatics and metabolomics to identify altered granulosa cells in patients with diminished ovarian reserveCited by: 6
Author(s): Ruifen He, Zhongying Zhao, Yongxiu Yang, Xiaolei Liang
Software Mentions: 4
Published: about 4 years ago
10.3389/fphys.2019.01226
Integrative Analysis of miRNA and mRNA Expression Profiles Associated With Human Atrial AgingCited by: 12
Author(s): Yan Yao, Chen‐Xi Jiang, Fan Wang, Han Yan, Deyong Long, Jinghua Zhao, Jiangang Wang, Chunxiao Zhang, Yang Li, Xiao-Li Tian, Qing Kenneth Wang, Gang Wu, Zhihui Zhang
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0210675
Murine trophoblast-derived and pregnancy-associated exosome-enriched extracellular vesicle microRNAs: Implications for placenta driven effects on maternal physiologyCited by: 27
Author(s): Adrianne L. Stefanski, Nadine Martinez, Lisa K. Peterson, Tiffany J. Callahan, Eileen P. Treacy, Marisa E. Luck, Samantha F. Friend, Amy Hermesch, Emin Maltepe, Tzu L. Phang, Leonard L. Dragone, Virginia D. Winn
Software Mentions: 3
Published: almost 6 years ago
10.18632/aging.203039
Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathwaysCited by: 6
Author(s): Jazmín Calyeca, Yalbi I. Balderas-Martínez, Moisés Selman, Annie Pardo
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-017-3571-3
Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horsesCited by: 32
Author(s): Núria Mach, Yuliaxis Ramayo-Caldas, Allison Clark, Marco Moroldo, Céline Robert, Éric Barrey, Jesús Maria López, Laurence Le Moyec
Software Mentions: 3
Published: over 7 years ago
10.3389/fgene.2021.617512
An Information Theoretical Multilayer Network Approach to Breast Cancer Transcriptional RegulationCited by: 5
Author(s): Soledad Ochoa, Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 3
Published: over 3 years ago
10.3389/fonc.2020.00845
Multi-Omic Regulation of the PAM50 Gene Signature in Breast Cancer Molecular SubtypesCited by: 14
Author(s): Soledad Ochoa, Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 3
Published: over 4 years ago
10.3390/genes9090458
miRmapper: A Tool for Interpretation of miRNA–mRNA Interaction NetworksCited by: 21
Author(s): Willian A. da Silveira, Ludivine Renaud, Jonathan Simpson, W. Bailey Glen, E. Starr Hazard, Dongjun Chung, Gary Hardiman
Software Mentions: 3
Published: about 6 years ago
10.1007/s00417-021-05214-z
MicroRNAs in the aqueous humor of patients with different types of glaucomaCited by: 12
Author(s): Ewa Kosior‐Jarecka, Marcin Czop, Karolina Gasińska, Dominika Wróbel-Dudzińska, Daniel Zalewski, Anna Bogucka‐Kocka, Janusz Kocki, Tomasz Żarnowski
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-88221-8
Investigating the effects of chronic perinatal alcohol and combined nicotine and alcohol exposure on dopaminergic and non-dopaminergic neurons in the VTACited by: 2
Author(s): Tina Kazemi, Shuyan Huang, Naze G. Avci, Yasemin M. Akay, Metin Akay
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-90583-y
Identification of Nrf2-responsive microRNA networks as putative mediators of myocardial reductive stressCited by: 13
Author(s): Justin M. Quiles, Mark E Pepin, Sini Sunny, Sandeep Shelar, Anil K. Challa, Brian Dalley, John R. Hoidal, Steven M. Pogwizd, Adam R. Wende, Namakkal S. Rajasekaran
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms18020274
SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA DataCited by: 45
Author(s): Claudia Cava, Antonio Colaprico, Gloria Bertoli, Alex Graudenzi, Tiago C. Silva, Catharina Olsen, Houtan Noushmehr, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni
Software Mentions: 3
Published: almost 8 years ago
10.1186/s12933-019-0918-x
Significance of circulating microRNAs in diabetes mellitus type 2 and platelet reactivity: bioinformatic analysis and reviewCited by: 103
Author(s): Justyna Pordzik, Daniel Jakubik, Joanna Jarosz-Popek, Zofia Wicik, Ceren Eyileten, Salvatore De Rosa, Ciro Indolfi, Jolanta M. Siller‐Matula, Pamela Czajka, Marek Postuła
Software Mentions: 2
Published: about 5 years ago
10.3389/fonc.2021.643280
An EBC/Plasma miRNA Signature Discriminates Lung Adenocarcinomas From Pleural Mesothelioma and Healthy ControlsCited by: 5
Author(s): Alice Faversani, Chiara Favero, Laura Dioni, Angela Cecilia Pesatori, Valentina Bollati, M. Montoli, Valeria Musso, Andrea Terrasi, Nicola Fusco, Mario Nosotti, Valentina Vaira, Alessandro Palleschi
Software Mentions: 2
Published: over 3 years ago
10.3390/cells10020273
MicroRNA Profiling of HL-1 Cardiac Cells-Derived Extracellular VesiclesCited by: 1
Author(s): Serena Silvestro, Agnese Gugliandolo, Luigi Chiricosta, Francesca Diomede, Oriana Trubiani, Placido Bramantı, Jacopo Pizzicannella, Emanuela Mazzon
Software Mentions: 2
Published: almost 4 years ago
10.1002/brb3.989
miRNA-regulated transcription associated with mouse strains predisposed to hypnotic effects of ethanolCited by: 1
Author(s): Brian Vestal, Pamela Russell, Richard A. Radcliffe, Lynne T. Bemis, Laura Saba, Katerina Kechris
Software Mentions: 2
Published: over 6 years ago
10.3389/fvets.2021.637622
MicroRNA Expression Changes and Integrated Pathways Associated With Poor Outcome in Canine OsteosarcomaCited by: 3
Author(s): Deanna D. Dailey, Ann Hess, Gerrit J. Bouma, Dawn L. Duval
Software Mentions: 2
Published: over 3 years ago
10.1038/tp.2016.268
The early growth response protein 1-miR-30a-5p-neurogenic differentiation factor 1 axis as a novel biomarker for schizophrenia diagnosis and treatment monitoringCited by: 47
Author(s): S Liu, F Zhang, Yin Yao Shugart, Lei Yang, X Li, Z Liu, Ning Sun, Chunxia Yang, Xiangjie Guo, Jie Shi, L Wang, Li Cheng, K Zhang, Taisheng Yang, Yong Xu
Software Mentions: 2
Published: almost 8 years ago
10.1155/2020/7370350
Probe into the Target and Mechanism of Jianpi Xiaoke Prescription for Treating Type 2 Diabetes Mellitus through miRNA Expression ProfilingCited by: 2
Author(s): Qinyue Guo, Yunsheng Xu, Jie Li, Dan Luo, Li Jun, Changwu Xu, Yanqin Huang
Software Mentions: 2
Published: almost 4 years ago
10.3390/biom11091356
Circulating MicroRNAs Highly Correlate to Expression of Cartilage Genes Potentially Reflecting OA Susceptibility—Towards Identification of Applicable Early OA BiomarkersCited by: 3
Author(s): Yolande F M Ramos, Rodrigo Coutinho de Almeida, Nico Lakenberg, Eka Suchiman, Hailiang Mei, Margreet Kloppenburg, Rob G H H Nelissen, Ingrid Meulenbelt
Software Mentions: 1
Published: about 3 years ago
10.18632/aging.202721
microRNA-363-3p reduces endothelial cell inflammatory responses in coronary heart disease via inactivation of the NOX4-dependent p38 MAPK axisCited by: 19
Author(s): Tao Zhou, Suining Li, Liehong Yang, Dingcheng Xiang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0141351
Altered Gene Expression Associated with microRNA Binding Site PolymorphismsCited by: 20
Author(s): Urmo Võsa, Tõnu Esko, Silva Kasela, Tarmo Annilo
Software Mentions: 1
Published: about 9 years ago
10.1186/s12935-015-0266-1
Bioinformatics identification of potentially involved microRNAs in Tibetan with gastric cancer based on microRNA profilingCited by: 16
Author(s): Ying Luo, Chengwu Zhang, Feng Tang, Jingbo Zhao, Cunfang Shen, Cheng Wang, Peng Yu, Miaozhou Wang, Yán Li, Ji Di, Rong Chen, Ri-Li Ge
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12864-018-5004-3
Predictive modeling of miRNA-mediated predisposition to alcohol-related phenotypes in mouseCited by: 6
Author(s): Pratyaydipta Rudra, Wenmei Shi, Pamela Russell, Brian Vestal, Boris Tabakoff, Paula L. Hoffman, Katerina Kechris, Laura Saba
Software Mentions: 1
Published: about 6 years ago
10.1186/s12882-016-0366-8
Identification of potential candidate genes for hypertensive nephropathy based on gene expression profileCited by: 12
Author(s): Zhi Chen, Hao Wu, Guohua Wang, Yan Feng
Software Mentions: 1
Published: about 8 years ago
10.3389/fcvm.2021.626878
Circular RNA Involvement in the Protective Effect of Human Umbilical Cord Mesenchymal Stromal Cell-Derived Extracellular Vesicles Against Hypoxia/Reoxygenation Injury in Cardiac CellsCited by: 5
Author(s): Zhang Chang-yi, Hongwu Wang, Jilin Li, Lian Ma
Software Mentions: 1
Published: over 3 years ago