bioconductor: multiMiR | Projects

10.3389/fgene.2019.01200

Dysregulation of MicroRNA Regulatory Network in Lower Extremities Arterial Disease
Cited by: 22
Author(s): Anna Bogucka‐Kocka, Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki
Software Mentions: 12
Published: about 5 years ago

10.18632/oncotarget.16664

MiRNA profiling of gastrointestinal stromal tumors by next-generation sequencing
Cited by: 31
Author(s): Ugnė Gyvytė, Simonas Juzėnas, Violeta Šaltenienė, Juozas Kupčinskas, Lina Poškienė, Laimutis Kučinskas, Sonata Jarmalaitė, Kristina Stuopelytė, Rūta Steponaitienė, Georg Hemmrich-Stanisak, Matthias Hübenthal, Alexander Link, Sabine Franke, André Franke, Dalia Pangonytė, Vaiva Lesauskaitė, Limas Kupčinskas, Jurgita Skiecevičienė
Software Mentions: 8
Published: over 7 years ago

10.3389/fnins.2021.689188

Identification of the Potential Gene Regulatory Networks and Therapeutics in Aged Mice With Postoperative Neurocognitive Disorder
Cited by: 9
Author(s): Wensi Wu, Yongbo Peng, Jiaxin Zhou, Xiaojun Zhang, Lin Cao, Wei-Jye Lin, Yanan Lu, Jing Wen, Zhi Wang
Software Mentions: 8
Published: over 3 years ago

10.3390/jcm9051251

Dysregulations of MicroRNA and Gene Expression in Chronic Venous Disease
Cited by: 12
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 8
Published: over 4 years ago

10.3390/jcm9061974

Dysregulation of microRNA Modulatory Network in Abdominal Aortic Aneurysm
Cited by: 13
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 7
Published: over 4 years ago

10.1186/s12864-019-6110-6

Insight into genetic regulation of miRNA in mouse brain
Cited by: 4
Author(s): Gordon Kordas, Pratyaydipta Rudra, Audrey E. Hendricks, Laura Saba, Katerina Kechris
Software Mentions: 6
Published: about 5 years ago

10.1186/s12885-021-08711-w

Construction of a ceRNA network of hub genes affecting immune infiltration in ovarian cancer identified by WGCNA
Cited by: 12
Author(s): Rongjia Su, Chengjuan Jin, Lina Zhou, Yannan Cao, Menghua Kuang, Linxia Li, Jianbin Xiang
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-39220-3

The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome Virus
Cited by: 9
Author(s): Sophie Dhorne–Pollet, Elisa Crisci, Núria Mach, Patricia Renson, Florence Jaffrézic, Guillemette Marot, Tatiana Maroilley, Marco Moroldo, Jérôme Lecardonnel, Fany Blanc, Nicolas Bertho, Olivier Bourry, Elisabetta Giuffra
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12916-020-01898-y

Development and validation of a novel circular RNA as an independent prognostic factor in acute myeloid leukemia
Cited by: 9
Author(s): Jinghan Wang, Jiajia Pan, Shujuan Huang, Fenglin Li, Jiansong Huang, Xia Li, Qing Ling, Wenle Ye, Yungui Wang, Wenjuan Yu, Jie Jin
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13195-021-00862-z

Prediction of differentially expressed microRNAs in blood as potential biomarkers for Alzheimer’s disease by meta-analysis and adaptive boosting ensemble learning
Cited by: 26
Author(s): Sze Chung Yuen, Xueya Liang, Hongmei Zhu, Yongliang Jia, Siu-wai Leung
Software Mentions: 5
Published: over 3 years ago

10.1186/s12967-020-02561-z

Gene correlation network analysis to identify regulatory factors in sepsis
Cited by: 25
Author(s): Zhongheng Zhang, Lin Chen, Ping Xu, Lifeng Xing, Yucai Hong, Pengpeng Chen
Software Mentions: 5
Published: about 4 years ago

10.1038/srep22932

Integrated mRNA and miRNA expression profiling in blood reveals candidate biomarkers associated with endurance exercise in the horse
Cited by: 44
Author(s): Núria Mach, Sandra Plancade, Alicja Pacholewska, Jérôme Lecardonnel, Julie Rivière, Marco Moroldo, Anne Vaiman, Caroline Morgenthaler, Marine Beinat, Alizée Nevot, Céline Robert, Éric Barrey
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12920-021-00905-2

Bioinformatic analysis reveals an exosomal miRNA-mRNA network in colorectal cancer
Cited by: 17
Author(s): Jun Ma, Peilong Wang, Lei Huang, Jianxia Qiao, Jianhong Li
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-018-37098-1

Comparison between dopaminergic and non-dopaminergic neurons in the VTA following chronic nicotine exposure during pregnancy
Cited by: 9
Author(s): Renee F. Keller, Tina Kazemi, Andrei Dragomir, Yasemin M. Akay, Metin Akay
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-018-31882-9

Investigating the genetic profile of dopaminergic neurons in the VTA in response to perinatal nicotine exposure using mRNA-miRNA analyses
Cited by: 14
Author(s): Renee F. Keller, Andrei Dragomir, Yonggang Fan, Yasemin M. Akay, Metin Akay
Software Mentions: 5
Published: over 6 years ago

10.3390/genes11090983

MicroRNAs Modulate the Pathogenesis of Alzheimer’s Disease: An In Silico Analysis in the Human Brain
Cited by: 12
Author(s): Agnese Gugliandolo, Luigi Chiricosta, Virginia Boccardi, Patrizia Mecocci, Placido Bramantı, Emanuela Mazzon
Software Mentions: 4
Published: over 4 years ago

10.18632/oncotarget.10052

Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs
Cited by: 71
Author(s): Jie Li, Kecheng Lei, Zengrui Wu, Weihua Li, Guixia Liu, Jianwen Liu, Feixiong Cheng, Yun Tang
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.9812

Using bioinformatics and metabolomics to identify altered granulosa cells in patients with diminished ovarian reserve
Cited by: 6
Author(s): Ruifen He, Zhongying Zhao, Yongxiu Yang, Xiaolei Liang
Software Mentions: 4
Published: over 4 years ago

10.3389/fphys.2019.01226

Integrative Analysis of miRNA and mRNA Expression Profiles Associated With Human Atrial Aging
Cited by: 12
Author(s): Yan Yao, Chen‐Xi Jiang, Fan Wang, Han Yan, Deyong Long, Jinghua Zhao, Jiangang Wang, Chunxiao Zhang, Yang Li, Xiao-Li Tian, Qing Kenneth Wang, Gang Wu, Zhihui Zhang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0210675

Murine trophoblast-derived and pregnancy-associated exosome-enriched extracellular vesicle microRNAs: Implications for placenta driven effects on maternal physiology
Cited by: 27
Author(s): Adrianne L. Stefanski, Nadine Martinez, Lisa K. Peterson, Tiffany J. Callahan, Eileen P. Treacy, Marisa E. Luck, Samantha F. Friend, Amy Hermesch, Emin Maltepe, Tzu L. Phang, Leonard L. Dragone, Virginia D. Winn
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.203039

Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways
Cited by: 6
Author(s): Jazmín Calyeca, Yalbi I. Balderas-Martínez, Moisés Selman, Annie Pardo
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-017-3571-3

Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses
Cited by: 32
Author(s): Núria Mach, Yuliaxis Ramayo-Caldas, Allison Clark, Marco Moroldo, Céline Robert, Éric Barrey, Jesús Maria López, Laurence Le Moyec
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2021.617512

An Information Theoretical Multilayer Network Approach to Breast Cancer Transcriptional Regulation
Cited by: 5
Author(s): Soledad Ochoa, Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2020.00845

Multi-Omic Regulation of the PAM50 Gene Signature in Breast Cancer Molecular Subtypes
Cited by: 14
Author(s): Soledad Ochoa, Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 3
Published: over 4 years ago

10.3390/genes9090458

miRmapper: A Tool for Interpretation of miRNA–mRNA Interaction Networks
Cited by: 21
Author(s): Willian A. da Silveira, Ludivine Renaud, Jonathan Simpson, W. Bailey Glen, E. Starr Hazard, Dongjun Chung, Gary Hardiman
Software Mentions: 3
Published: over 6 years ago

10.1007/s00417-021-05214-z

MicroRNAs in the aqueous humor of patients with different types of glaucoma
Cited by: 12
Author(s): Ewa Kosior‐Jarecka, Marcin Czop, Karolina Gasińska, Dominika Wróbel-Dudzińska, Daniel Zalewski, Anna Bogucka‐Kocka, Janusz Kocki, Tomasz Żarnowski
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-88221-8

Investigating the effects of chronic perinatal alcohol and combined nicotine and alcohol exposure on dopaminergic and non-dopaminergic neurons in the VTA
Cited by: 2
Author(s): Tina Kazemi, Shuyan Huang, Naze G. Avci, Yasemin M. Akay, Metin Akay
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-90583-y

Identification of Nrf2-responsive microRNA networks as putative mediators of myocardial reductive stress
Cited by: 13
Author(s): Justin M. Quiles, Mark E Pepin, Sini Sunny, Sandeep Shelar, Anil K. Challa, Brian Dalley, John R. Hoidal, Steven M. Pogwizd, Adam R. Wende, Namakkal S. Rajasekaran
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms18020274

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data
Cited by: 45
Author(s): Claudia Cava, Antonio Colaprico, Gloria Bertoli, Alex Graudenzi, Tiago C. Silva, Catharina Olsen, Houtan Noushmehr, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12933-019-0918-x

Significance of circulating microRNAs in diabetes mellitus type 2 and platelet reactivity: bioinformatic analysis and review
Cited by: 103
Author(s): Justyna Pordzik, Daniel Jakubik, Joanna Jarosz-Popek, Zofia Wicik, Ceren Eyileten, Salvatore De Rosa, Ciro Indolfi, Jolanta M. Siller‐Matula, Pamela Czajka, Marek Postuła
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.643280

An EBC/Plasma miRNA Signature Discriminates Lung Adenocarcinomas From Pleural Mesothelioma and Healthy Controls
Cited by: 5
Author(s): Alice Faversani, Chiara Favero, Laura Dioni, Angela Cecilia Pesatori, Valentina Bollati, M. Montoli, Valeria Musso, Andrea Terrasi, Nicola Fusco, Mario Nosotti, Valentina Vaira, Alessandro Palleschi
Software Mentions: 2
Published: over 3 years ago

10.3390/cells10020273

MicroRNA Profiling of HL-1 Cardiac Cells-Derived Extracellular Vesicles
Cited by: 1
Author(s): Serena Silvestro, Agnese Gugliandolo, Luigi Chiricosta, Francesca Diomede, Oriana Trubiani, Placido Bramantı, Jacopo Pizzicannella, Emanuela Mazzon
Software Mentions: 2
Published: almost 4 years ago

10.1002/brb3.989

miRNA-regulated transcription associated with mouse strains predisposed to hypnotic effects of ethanol
Cited by: 1
Author(s): Brian Vestal, Pamela Russell, Richard A. Radcliffe, Lynne T. Bemis, Laura Saba, Katerina Kechris
Software Mentions: 2
Published: over 6 years ago

10.3389/fvets.2021.637622

MicroRNA Expression Changes and Integrated Pathways Associated With Poor Outcome in Canine Osteosarcoma
Cited by: 3
Author(s): Deanna D. Dailey, Ann Hess, Gerrit J. Bouma, Dawn L. Duval
Software Mentions: 2
Published: over 3 years ago

10.1038/tp.2016.268

The early growth response protein 1-miR-30a-5p-neurogenic differentiation factor 1 axis as a novel biomarker for schizophrenia diagnosis and treatment monitoring
Cited by: 47
Author(s): S Liu, F Zhang, Yin Yao Shugart, Lei Yang, X Li, Z Liu, Ning Sun, Chunxia Yang, Xiangjie Guo, Jie Shi, L Wang, Li Cheng, K Zhang, Taisheng Yang, Yong Xu
Software Mentions: 2
Published: almost 8 years ago

10.1155/2020/7370350

Probe into the Target and Mechanism of Jianpi Xiaoke Prescription for Treating Type 2 Diabetes Mellitus through miRNA Expression Profiling
Cited by: 2
Author(s): Qinyue Guo, Yunsheng Xu, Jie Li, Dan Luo, Li Jun, Changwu Xu, Yanqin Huang
Software Mentions: 2
Published: about 4 years ago

10.3390/biom11091356

Circulating MicroRNAs Highly Correlate to Expression of Cartilage Genes Potentially Reflecting OA Susceptibility—Towards Identification of Applicable Early OA Biomarkers
Cited by: 3
Author(s): Yolande F M Ramos, Rodrigo Coutinho de Almeida, Nico Lakenberg, Eka Suchiman, Hailiang Mei, Margreet Kloppenburg, Rob G H H Nelissen, Ingrid Meulenbelt
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.202721

microRNA-363-3p reduces endothelial cell inflammatory responses in coronary heart disease via inactivation of the NOX4-dependent p38 MAPK axis
Cited by: 19
Author(s): Tao Zhou, Suining Li, Liehong Yang, Dingcheng Xiang
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0141351

Altered Gene Expression Associated with microRNA Binding Site Polymorphisms
Cited by: 20
Author(s): Urmo Võsa, Tõnu Esko, Silva Kasela, Tarmo Annilo
Software Mentions: 1
Published: about 9 years ago

10.1186/s12935-015-0266-1

Bioinformatics identification of potentially involved microRNAs in Tibetan with gastric cancer based on microRNA profiling
Cited by: 16
Author(s): Ying Luo, Chengwu Zhang, Feng Tang, Jingbo Zhao, Cunfang Shen, Cheng Wang, Peng Yu, Miaozhou Wang, Yán Li, Ji Di, Rong Chen, Ri-Li Ge
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-018-5004-3

Predictive modeling of miRNA-mediated predisposition to alcohol-related phenotypes in mouse
Cited by: 6
Author(s): Pratyaydipta Rudra, Wenmei Shi, Pamela Russell, Brian Vestal, Boris Tabakoff, Paula L. Hoffman, Katerina Kechris, Laura Saba
Software Mentions: 1
Published: over 6 years ago

10.1186/s12882-016-0366-8

Identification of potential candidate genes for hypertensive nephropathy based on gene expression profile
Cited by: 12
Author(s): Zhi Chen, Hao Wu, Guohua Wang, Yan Feng
Software Mentions: 1
Published: about 8 years ago

10.3389/fcvm.2021.626878

Circular RNA Involvement in the Protective Effect of Human Umbilical Cord Mesenchymal Stromal Cell-Derived Extracellular Vesicles Against Hypoxia/Reoxygenation Injury in Cardiac Cells
Cited by: 5
Author(s): Zhang Chang-yi, Hongwu Wang, Jilin Li, Lian Ma
Software Mentions: 1
Published: almost 4 years ago

Projects: bioconductor: multiMiR

Papers Mentioning multiMiR 43