Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pROC

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pROC

Display and Analyze ROC Curves
38 versions
Latest release: 7 months ago
137 dependent packages
199,952 downloads last month

Papers Mentioning pROC 1,740

10.3389/fmolb.2021.659168
Transcriptomic Profiling Identifies DCBLD2 as a Diagnostic and Prognostic Biomarker in Pancreatic Ductal Adenocarcinoma
Cited by: 9
Author(s): Zengyu Feng, Kexian Li, Yulian Wu, Chenghong Peng
Software Mentions: 7
Published: about 3 years ago
10.1186/s12967-017-1195-7
Her2 assessment using quantitative reverse transcriptase polymerase chain reaction reliably identifies Her2 overexpression without amplification in breast cancer cases
Cited by: 13
Author(s): Gabriele Zoppoli, Anna Garuti, Gabriella Cirmena, Ludovica Verdun di Cantogno, C. Botta, M. Gallo, Domenico Ferraioli, Enrico Carminati, Paola Baccini, Monica Curto, Piero Fregatti, Edoardo Isnaldi, Michela Lia, Roberto Murialdo, Daniele Friedman, Anna Sapino, Alberto Ballestrero
Software Mentions: 7
Published: about 7 years ago
10.3389/fnagi.2019.00203
Revisiting the MotionWatch8©: Calibrating Cut-Points for Measuring Physical Activity and Sedentary Behavior Among Adults With Stroke
Cited by: 6
Author(s): Ryan S. Falck, John R. Best, Michael C. R. Li, Janice J. Eng, Teresa Liu-Ambrose
Software Mentions: 7
Published: almost 5 years ago
10.3389/fneur.2021.580440
Machine Learning Models on ADC Features to Assess Brain Changes of Children With Pierre Robin Sequence
Cited by: 0
Author(s): Ying Wang, Feng Yang, Meijiao Zhu, Ming Yang
Software Mentions: 7
Published: about 3 years ago
10.1002/advs.201901819
Whole‐Genome Promoter Profiling of Plasma DNA Exhibits Diagnostic Value for Placenta‐Origin Pregnancy Complications
Cited by: 25
Author(s): Zhi-Wei Guo, Fang Yang, Jun Zhang, Zhigang Zhang, Kun Li, Qi Tian, Hongyan Hou, Chenyang Xu, Qiping Lu, Zhonglu Ren, Xiaoxue Yang, Zenglu Lv, Ke Wang, Xinping Yang, Yanni Wu, Xiaobo Yang
Software Mentions: 7
Published: over 4 years ago
10.3389/fonc.2020.538133
Behavior-Oriented Nomogram for the Stratification of Lower-Grade Gliomas to Improve Individualized Treatment
Cited by: 6
Author(s): Ruo-Lun Wei, Liwei Zhang, Jianguo Li, Fengdong Yang, Yue Xue, Xinting Wei
Software Mentions: 7
Published: over 3 years ago
10.1101/2021.03.07.21252875
Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality
Cited by: 21
Author(s): Teruyuki Nakanishi, Sara Pigazzini, Frauke Degenhardt, Mattia Cordioli, Guillaume Butler‐Laporte, Douglas Maya-Miles, Beatriz Nafr_a-Jim_nez, Youssef Bouysran, Mari Niemi, Adriana Palom, David Ellinghaus, Atlas Khan, Manuel Mart_nez-Bueno, Selina Rolker, Sara Amitano, Luisa Roade, FinnGen, Francesca Fava, Christoph D. Spinner, Daniele Prati, David Bernardo, Féderico García, Gilles Darcis, Israel Fern_ndez-Cadenas, Jan Cato Holter, Jesús M. Bañales, Robert Frithiof, Krzysztof Kiryluk, Stefano Duga, Rosanna Asselta, Alexandre C. Pereira, Manuel Romero-G_mez, Luís Bujanda, Johannes R. Hov, Isabelle Migeotte, Alessandra Renieri, Anna M. Planas, Kerstin U. Ludwig, María Buti, Souad Rahmouni, Marta E. Alarc_n-Riquelme, Eva C. Schulte, André Franke, Tom H. Karlsen, Luca Valenti, Hugo Zeberg, J. Brent Richards, Andrea Ganna
Software Mentions: 7
Published: about 3 years ago
10.1186/s12935-021-02050-3
Constructe a novel 5 hypoxia genes signature for cervical cancer
Cited by: 13
Author(s): Yang Yang, Yaling Li, Ruiqun Qi, Lan Zhang
Software Mentions: 7
Published: almost 3 years ago
10.1371/journal.pmed.1002699
Deep-learning-assisted diagnosis for knee magnetic resonance imaging: Development and retrospective validation of MRNet
Cited by: 385
Author(s): Nicholas Bien, Pranav Rajpurkar, Robyn L. Ball, Jeremy Irvin, Allison Park, Erik Jones, Michael Bereket, Bhavik N. Patel, Kristen W. Yeom, Katie Shpanskaya, Safwan Halabi, Evan J. Zucker, Gary S. Fanton, Derek F. Amanatullah, Christopher F. Beaulieu, Geoffrey M. Riley, Russell J. Stewart, Francis G. Blankenberg, David B. Larson, Ricky Jones, Curtis P. Langlotz, Andrew Y. Ng, Matthew P. Lungren
Software Mentions: 7
Published: over 5 years ago
10.3390/cancers13071730
Identification and Validation of an Immune-Associated RNA-Binding Proteins Signature to Predict Clinical Outcomes and Therapeutic Responses in Glioma Patients
Cited by: 11
Author(s): Ruotong Tian, Yimin Li, Qian Liu, Minfeng Shu
Software Mentions: 7
Published: about 3 years ago
10.3389/fmed.2021.670694
Investigation of Coagulation Biomarkers to Assess Clinical Deterioration in SARS-CoV-2 Infection
Cited by: 15
Author(s): Paul Billoir, Kévin Alexandre, Thomas Duflot, Maxime Roger, S. Miranda, Odile Goria, Luc Marie Joly, Mathieu Demeyere, Guillaume Feugray, Valéry Brunel, Manuel Etienne, Véronique Le Cam Duchez
Software Mentions: 7
Published: almost 3 years ago
10.18632/aging.203017
Identification of key transcriptome biomarkers based on a vital gene module associated with pathological changes in Alzheimer’s disease
Cited by: 11
Author(s): Tong Zhang, Yang Shen, Yiqing Guo, Junyan Yao
Software Mentions: 7
Published: almost 3 years ago
10.3390/s19071588
Reducing False Arrhythmia Alarms Using Different Methods of Probability and Class Assignment in Random Forest Learning Methods
Cited by: 9
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski
Software Mentions: 7
Published: about 5 years ago
10.3389/fimmu.2020.599637
Fecal IgA, Antigen Absorption, and Gut Microbiome Composition Are Associated With Food Antigen Sensitization in Genetically Susceptible Mice
Cited by: 17
Author(s): Johanna M. Smeekens, Brandi T. Johnson‐Weaver, Andrew Hinton, M. Andrea Azcárate-Peril, Timothy P. Moran, R.M. Immormino, Janelle Kesselring, Erin C. Steinbach, Kelly Orgel, Herman F. Staats, A. Wesley Burks, Peter J. Mucha, Martin T. Ferris, Michael D. Kulis
Software Mentions: 7
Published: over 3 years ago
10.7717/peerj.11105
The biosonar of the boto: evidence of differences among species of river dolphins (<i>Inia</i>spp.) from the Amazon
Cited by: 2
Author(s): Jéssica Fernandes de Melo, Thiago Orion Simões Amorim, Mariana Paschoalini, Artur Andriolo
Software Mentions: 7
Published: about 3 years ago
10.18632/aging.102571
Identification of molecular correlations of RBM8A with autophagy in Alzheimer's disease
Cited by: 40
Author(s): Donghua Zou, Rongjie Li, Xiaohua Huang, Guoying Chen, Ying Liu, Youshi Meng, Yimei Wang, Yuan Wu, Ying Mao
Software Mentions: 7
Published: over 4 years ago
10.3389/fgene.2020.577585
Development of an miRNA-Array-Based Diagnostic Signature for Periodontitis
Cited by: 11
Author(s): Sanli Jin, Jianguo Zhou, Xiaoyan Guan, Guohui Bai, Jianguo Liu, Liangwen Chen
Software Mentions: 7
Published: over 3 years ago
10.3389/fimmu.2020.580934
Redox Regulator GLRX Is Associated With Tumor Immunity in Glioma
Cited by: 14
Author(s): Yuanhao Chang, Guanzhang Li, You Zhai, Lijie Huang, Yuemei Feng, Di Wang, Wei Zhang, Huimin Hu
Software Mentions: 7
Published: over 3 years ago
10.3389/fimmu.2021.691811
Immune Infiltrating Cells-Derived Risk Signature Based on Large-scale Analysis Defines Immune Landscape and Predicts Immunotherapy Responses in Glioma Tumor Microenvironment
Cited by: 36
Author(s): Nan Zhang, Hao Zhang, Zeyu Wang, Ziyu Dai, Xun Zhang, Quan Cheng, Zhixiong Liu
Software Mentions: 7
Published: almost 3 years ago
10.1371/journal.pone.0189860
Survival analysis and classification methods for forest fire size
Cited by: 14
Author(s): Pier Olivier Tremblay, Thierry Duchesne, Steven G. Cumming
Software Mentions: 7
Published: over 6 years ago
10.18632/aging.102518
A twenty gene-based gene set variation score reflects the pathological progression from cirrhosis to hepatocellular carcinoma
Cited by: 21
Author(s): Yan Lin, Rong Liang, Jiazhou Ye, Qian Li, Ziyu Liu, Xing Gao, Xuemin Piao, Rongyun Mai, Donghua Zou, Lianying Ge
Software Mentions: 7
Published: over 4 years ago
10.1515/tnsci-2021-0002
<i>IKBIP</i> is a novel EMT-related biomarker and predicts poor survival in glioma
Cited by: 9
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Aijun Shan
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-021-93286-6
Development and validation of an institutional nomogram for aiding aneurysm rupture risk stratification
Cited by: 3
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Huijian Ge, Shaolin Li, Hengwei Jin, Peng Liu, YouXiang Li
Software Mentions: 7
Published: almost 3 years ago
10.3389/fgene.2020.595757
Periostin Contributes to Immunoglobulin a Nephropathy by Promoting the Proliferation of Mesangial Cells: A Weighted Gene Correlation Network Analysis
Cited by: 4
Author(s): Jinlong Wu, Qisheng Lin, Shu Li, Xinghua Shao, Xuying Zhu, Minfang Zhang, Wenyan Zhou, Zhaohui Ni
Software Mentions: 7
Published: over 3 years ago
10.1186/s13075-016-1120-0
A discrete cluster of urinary biomarkers discriminates between active systemic lupus erythematosus patients with and without glomerulonephritis
Cited by: 25
Author(s): Carolina Landolt-Marticorena, Stephenie D. Prokopec, Stacey Morrison, Babak Noamani, Dennisse Bonilla, Heather N. Reich, James W. Scholey, Carmen Ávila-Casado, Paul R. Fortin, Paul C. Boutros, Joan E. Wither
Software Mentions: 7
Published: over 7 years ago
10.18632/aging.102506
Reactive oxygen species metabolism-based prediction model and drug for patients with recurrent glioblastoma
Cited by: 7
Author(s): Nian Tan, Jianwei Liu, Ping Li, Zhaohao Sun, Jianming Pan, Wei Zhao
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-020-67629-8
Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-020-60546-w
Inadequate socialisation, inactivity, and urban living environment are associated with social fearfulness in pet dogs
Cited by: 45
Author(s): Jenni Puurunen, Emma Hakanen, Milla Salonen, Salla Mikkola, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-019-53843-6
Monocytes affect bone mineral density in pre- and postmenopausal women through ribonucleoprotein complex biogenesis by integrative bioinformatics analysis
Cited by: 8
Author(s): Kang-Wen Xiao, Jiali Li, Zhao-Yi Zeng, Zhibo Liu, Zhiqiang Hou, Xin Yan, Lin Cai
Software Mentions: 7
Published: over 4 years ago
10.1186/s12935-021-02212-3
Midkine promotes glioblastoma progression via PI3K-Akt signaling
Cited by: 14
Author(s): Beiquan Hu, Chao Qin, Li Li, Lei Wei, Xianlun Mo, Huasheng Fan, Yuanhua Lei, Feng Wang, Donghua Zou
Software Mentions: 7
Published: over 2 years ago
10.1038/s41598-019-50260-7
Plasma metabolites associated with homeostatic model assessment of insulin resistance: metabolite-model design and external validation
Cited by: 5
Author(s): Pablo Hernández‐Alonso, Jesús García‐Gavilán, Lucía Camacho-Barcia, Anders Sjödin, Thorsten Hansen, Jo Harrold, Jordi Salas‐Salvadó, Jason C.G. Halford, Sı́lvia Canudas, Mònica Bulló
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0201016
Predicting hospital admission at emergency department triage using machine learning
Cited by: 155
Author(s): Woo Suk Hong, Adrian D. Haimovich, Richard A. Taylor
Software Mentions: 7
Published: almost 6 years ago
10.1038/s41598-018-23584-z
Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variables
Cited by: 48
Author(s): Raquel Iniesta, Karen Hodgson, Daniel Ståhl, Karim Malki, Wolfgang Maier, Marcella Rietschel, Ole Mors, Joanna Hauser, Neven Henigsberg, Mojca Zvezdana Dernovšek, Daniel Souery, Richard Dobson, Katherine J. Aitchison, Anne Farmer, Peter McGuffin, Cathryn M. Lewis, Rudolf Uher
Software Mentions: 7
Published: about 6 years ago
10.1038/s41419-021-04015-w
Autophagy-related circRNA evaluation reveals hsa_circ_0001747 as a potential favorable prognostic factor for biochemical recurrence in patients with prostate cancer
Cited by: 16
Author(s): Chuanfan Zhong, Kuan-Hung Wu, Shuo Wang, Zining Long, Taowei Yang, Weibo Zhong, Xiao Tan, Zixian Wang, Chuanyin Li, Jianming Lü, Xiangming Mao
Software Mentions: 7
Published: almost 3 years ago
10.1038/s41597-019-0207-2
Compendiums of cancer transcriptomes for machine learning applications
Cited by: 13
Author(s): Su Bin Lim, Swee Jin Tan, Wan-Teck Lim, Chwee Teck Lim
Software Mentions: 7
Published: over 4 years ago
10.1186/s12935-021-02086-5
PODN is a prognostic biomarker and correlated with immune infiltrates in osteosarcoma
Cited by: 9
Author(s): Feng Yao, Zhenxin Zhu, Jun Wen, Fu Yong Zhang, Zheng Zhang, Lei Zhu, Guang Hao Su, Quan Yuan, Yun Fang Zhen, Xiao Dong Wang
Software Mentions: 7
Published: almost 3 years ago
10.1186/s40462-020-0194-0
Effects of age on foraging behavior in two closely related albatross species
Cited by: 18
Author(s): Caitlin K. Frankish, Andrea Manica, Richard A. Phillips
Software Mentions: 7
Published: over 4 years ago
10.1155/2019/4572130
Intraoperative Hepatic Blood Inflow Can Predict Early Acute Kidney Injury following DCD Liver Transplantation: A Retrospective Observational Study
Cited by: 2
Author(s): Ao Jiao, Qingpeng Liu, Feng Li, Rui Guo, Bowen Wang, Xiwen Lu, Ning Sun, Chengshuo Zhang, Xiaohang Li, Jialin Zhang
Software Mentions: 7
Published: almost 5 years ago
10.1038/srep29532
Delineation of autoantibody repertoire through differential proteogenomics in hepatitis C virus-induced cryoglobulinemia
Cited by: 12
Author(s): Masato Ogishi, Hiroshi Yotsuyanagi, Kyoji Moriya, Kazuhiko Koike
Software Mentions: 7
Published: almost 8 years ago
10.1186/s12864-017-4304-3
Transcriptome profiling of aging Drosophila photoreceptors reveals gene expression trends that correlate with visual senescence
Cited by: 71
Author(s): Hana Hall, Patrick S Medina, Daphne A. Cooper, Spencer E. Escobedo, Jeremiah Rounds, Kaelan J. Brennan, Christopher Vincent, Pedro Miura, R. W. Doerge, Vikki M. Weake
Software Mentions: 7
Published: over 6 years ago
10.20892/j.issn.2095-3941.2020.0402
The m6A methylation landscape stratifies hepatocellular carcinoma into 3 subtypes with distinct metabolic characteristics
Cited by: 17
Author(s): Xiaotian Shen, Beiyuan Hu, Jing Xu, Wei Qin, Yan Fu, Shun Wang, Qiongzhu Dong, Lun–Xiu Qin
Software Mentions: 7
Published: over 4 years ago
10.3390/jcm9124131
Predicting the Response of High Frequency Spinal Cord Stimulation in Patients with Failed Back Surgery Syndrome: A Retrospective Study with Machine Learning Techniques
Cited by: 5
Author(s): Lisa Goudman, Jean‐Pierre Van Buyten, Ann De Smedt, Iris Smet, Marieke Devos, Ali Jerjir, Maarten Moens
Software Mentions: 7
Published: over 3 years ago
10.3390/jcm8081128
NEWS2 is Superior to qSOFA in Detecting Sepsis with Organ Dysfunction in the Emergency Department
Cited by: 60
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Parham Sendi, Per Åkesson, Fredrik Kahn
Software Mentions: 7
Published: almost 5 years ago
10.1155/2021/8323487
LncRNA ELF3-AS1 is a Prognostic Biomarker and Correlated with Immune Infiltrates in Hepatocellular Carcinoma
Cited by: 14
Author(s): Tianming Chen, Changhao Zhu, Xing Wang, Yaozhen Pan
Software Mentions: 7
Published: almost 3 years ago
10.3389/fmed.2021.635771
Application of Machine Learning Algorithms to Predict Central Lymph Node Metastasis in T1-T2, Non-invasive, and Clinically Node Negative Papillary Thyroid Carcinoma
Cited by: 35
Author(s): Jiang Zhu, Jinxin Zheng, Longfei Li, Rui Huang, Haoyu Ren, Denghui Wang, Zhijun Dai, Xinliang Su
Software Mentions: 7
Published: about 3 years ago
10.1186/s12874-019-0681-4
Machine learning in medicine: a practical introduction
Cited by: 526
Author(s): Jenni A. M. Sidey-Gibbons, Chris Sidey‐Gibbons
Software Mentions: 7
Published: about 5 years ago
10.1002/1878-0261.12348
Integrating biomarkers across omic platforms: an approach to improve stratification of patients with indolent and aggressive prostate cancer
Cited by: 38
Author(s): Keefe Murphy, Brendan Murphy, Susie Boyce, Louise Flynn, Sarah Gilgunn, Colm J. O’Rourke, Cathy Rooney, Henning Stöckmann, Anna Walsh, Stephen P. Finn, Richard O’Kennedy, John O’Leary, Stephen R. Pennington, Antoinette S. Perry, Pauline M. Rudd, Radka Saldova, Orla Sheils, Denis C. Shields, R. William G. Watson
Software Mentions: 7
Published: almost 6 years ago
10.1371/journal.pone.0219302
Artificial intelligence algorithm for predicting mortality of patients with acute heart failure
Cited by: 74
Author(s): Joon Kwon, Kyung Hee Kim, Ki‐Hyun Jeon, Sang Eun Lee, Hae Young Lee, Hyun Jai Cho, Jin Oh Choi, Eun Seok Jeon, Min Seok Kim, Jae Joong Kim, Kyung Kuk Hwang, Shung Chull Chae, Sang Hong Baek, Seok Min Kang, Dong Ju Choi, Byung Su Yoo, Kye Hun Kim, Hyun-Young Park, Myeong Chan Cho, Byung Hee Oh
Software Mentions: 7
Published: almost 5 years ago
10.3389/fonc.2020.00033
PLXNC1 Enhances Carcinogenesis Through Transcriptional Activation of IL6ST in Gastric Cancer
Cited by: 9
Author(s): Jie Chen, Haining Liu, Jinggui Chen, Bo Sun, Jianghong Wu, Chunyan Du
Software Mentions: 7
Published: over 4 years ago
10.3389/fonc.2020.01121
Radiomics Based on CECT in Differentiating Kimura Disease From Lymph Node Metastases in Head and Neck: A Non-Invasive and Reliable Method
Cited by: 7
Author(s): Ying Zhang, Sheng-Bo Yu, Li Zhang, Lillian Kang
Software Mentions: 6
Published: almost 4 years ago
10.1155/2020/8182358
Two Gene Set Variation Index as Biomarker of Bacterial and Fungal Sepsis
Cited by: 4
Author(s): Xiaowen Zheng, Yifeng Luo, Qian Li, Jihua Feng, Chunling Zhao, Junyu Lu, Jiefeng Luo, Jianfeng Zhang
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12873-020-00396-x
The utility of the rapid emergency medicine score (REMS) compared with SIRS, qSOFA and NEWS for Predicting in-hospital Mortality among Patients with suspicion of Sepsis in an emergency department
Cited by: 23
Author(s): Onlak Ruangsomboon, Phetsinee Boonmee, Chok Limsuwat, Tipa Chakorn, Apichaya Monsomboon
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0206862
Optimal intensive care outcome prediction over time using machine learning
Cited by: 64
Author(s): Christopher Meiring, Abhishek Dixit, Steve Harris, Niall MacCallum, David Brealey, Peter Watkinson, Andrew Jones, Simon Ashworth, Richard Beale, Stephen Brett, Mervyn Singer, Ari Ercole
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0210467
Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: over 5 years ago
10.1186/s12885-021-08520-1
Computational analysis for identification of early diagnostic biomarkers and prognostic biomarkers of liver cancer based on GEO and TCGA databases and studies on pathways and biological functions affecting the survival time of liver cancer
Cited by: 21
Author(s): Shuangquan Gao, Jian Gang, Man Yu, Guiliang Xin, Huixin Tan
Software Mentions: 6
Published: almost 3 years ago
10.3390/cancers13102447
MRI-Based Radiomics Analysis for the Pretreatment Prediction of Pathologic Complete Tumor Response to Neoadjuvant Systemic Therapy in Breast Cancer Patients: A Multicenter Study
Cited by: 16
Author(s): R. Granzier, Abdalla Ibrahim, Sergey Primakov, Sanaz Samiei, Thiemo J A van Nijnatten, Maaike de Boer, E. M. Heuts, F J Hulsmans, A. Chatterjee, Philippe Lambin, Marc Lobbes, Henry C. Woodruff, Marjolein L. Smidt
Software Mentions: 6
Published: about 3 years ago
10.1016/j.redox.2020.101764
Prediction of survival odds in COVID-19 by zinc, age and selenoprotein P as composite biomarker
Cited by: 130
Author(s): Raban Arved Heller, Qian Sun, Julian Hackler, Julian Seelig, Linda Seibert, Asan Cherkezov, Waldemar B. Minich, Petra Seemann, Joachim Diegmann, Maximilian Pilz, Manuel Bachmann, Alireza Ranjbar, Arash Moghaddam, Lutz Schomburg
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0197074
Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics
Cited by: 43
Author(s): Crystal M. Gigante, Lisa Dettinger, James Powell, Melanie Seiders, Rene Edgar Condori, Richard Griesser, Kenneth Okogi, Maria P. Carlos, Kendra N. Pesko, Mike Breckenridge, Edson Michael M. Simon, Maria Yna Joyce Chu, April Davis, Scott Brunt, Lillian A. Orciari, Pamela A. Yager, William C. Carson, Claire Hartloge, Jeremiah T. Saliki, Susan Sánchez, Mojgan Deldari, Kristina Hsieh, Ashutosh Wadhwa, Kimberly Wilkins, Veronica Yung Peredo, Patricia Rabideau, Nina Gruhn, Rolain Cadet, Shrikrishna Isloor, Sujith S Nath, Tomy Joseph, Jinxin Gao, Ryan M. Wallace, Mary G. Reynolds, Victoria A. Olson, Li Yu
Software Mentions: 6
Published: about 6 years ago
10.1371/journal.pone.0207002
Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancer
Cited by: 24
Author(s): Mansi Shah, Todd Z. DeSantis, José‐Miguel Yamal, Tiffany L. Weir, Elizabeth P. Ryan, Julia Cope, Emily B. Hollister
Software Mentions: 6
Published: over 5 years ago
10.3390/cancers13133116
Plasma Proteomic Analysis in Non-Small Cell Lung Cancer Patients Treated with PD-1/PD-L1 Blockade
Cited by: 14
Author(s): Mohamed Eltahir, Johan Isaksson, Johanna Sofia Margareta Mattsson, Klas Kärre, Johan Botling, Martin Lord, Sara M. Mangsbo, Patrick Micke
Software Mentions: 6
Published: almost 3 years ago
10.1371/journal.pone.0207192
Mortality prediction in patients with isolated moderate and severe traumatic brain injury using machine learning models
Cited by: 66
Author(s): Cheng-Shyuan Rau, Pao‐Jen Kuo, Peng‐Chen Chien, Chun-Ying Huang, Hsiao-Yun Hsieh, Ching‐Hua Hsieh
Software Mentions: 6
Published: over 5 years ago
10.18632/aging.103923
Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
Cited by: 3
Author(s): Kui Chen, Bingqing Huang, Shan Yan, Siyi Xu, Keqin Li, Kuiming Zhang, Qi Wang, Zhongwei Zhuang, Liang Wei, Yanfei Zhang, Min Liu, Hao Lian, Chunlong Zhong
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0118573
Transcriptomics of Maternal and Fetal Membranes Can Discriminate between Gestational-Age Matched Preterm Neonates with and without Cognitive Impairment Diagnosed at 18–24 Months
Cited by: 16
Author(s): Athina Pappas, Tinnakorn Chaiworapongsa, Roberto Romero, Steven J. Korzeniewski, Josef C. Cortez, Gaurav Bhatti, Nardhy Gomez-López, Sonia S. Hassan, Seetha Shankaran, Adi L. Tarca
Software Mentions: 6
Published: about 9 years ago
10.3389/fonc.2021.580886
Radiomics Nomogram for Identifying Sub-1 cm Benign and Malignant Thyroid Lesions
Cited by: 7
Author(s): Xinxin Wu, Jingjing Li, Yakui Mou, Yao Yao, Jingjing Cui, Ning Mao, Xuejiao Song
Software Mentions: 6
Published: almost 3 years ago
10.1186/s12885-021-08052-8
Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma
Cited by: 2
Author(s): Weike Gao, Luan Li, Xinyin Han, Siyao Liu, Chengzhen Li, Guanying Yu, Lei Zhang, Dongsheng Zhang, Caiyun Liu, Erhong Meng, Shuai Hong, Dongliang Wang, Peiming Guo, Guangjun Shi
Software Mentions: 6
Published: about 3 years ago
10.1186/s40168-019-0766-7
Discordant transmission of bacteria and viruses from mothers to babies at birth
Cited by: 61
Author(s): Rabia Maqsood, Rachel Rodgers, Cynthia Rodríguez, Scott A. Handley, I. Malick Ndao, Phillip I. Tarr, Barbara Warner, Efrem S. Lim, Lori R. Holtz
Software Mentions: 6
Published: over 4 years ago
10.3389/fonc.2021.721644
CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular Carcinoma
Cited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: over 2 years ago
10.1371/journal.pone.0116095
ICan: An Integrated Co-Alteration Network to Identify Ovarian Cancer-Related Genes
Cited by: 9
Author(s): Yuanshuai Zhou, Yongjing Liu, Kening Li, Rui Zhang, Fujun Qiu, Ning Zhao, Yan Xu
Software Mentions: 6
Published: about 9 years ago
10.1371/journal.pone.0232534
A model for the assessment of bluetongue virus serotype 1 persistence in Spain
Cited by: 8
Author(s): Cecilia Aguilar-Vega, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 6
Published: about 4 years ago
10.1186/1471-2105-12-77
pROC: an open-source package for R and S+ to analyze and compare ROC curves
Cited by: 7,791
Author(s): Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller
Software Mentions: 6
Published: about 13 years ago
10.3389/fneur.2020.00285
Neoplastic and Non-neoplastic Acute Intracerebral Hemorrhage in CT Brain Scans: Machine Learning-Based Prediction Using Radiomic Image Features
Cited by: 13
Author(s): Jawed Nawabi, Helge Kniep, Reza Kabiri, Gabriel Broocks, Tobias D Faizy, Christian J. Thaler, Gerhard Schön, Jens Fiehler, Uta Hanning
Software Mentions: 6
Published: about 4 years ago
10.3389/fneur.2019.00844
Bifurcation Configuration Is an Independent Risk Factor for Aneurysm Rupture Irrespective of Location
Cited by: 17
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Shaolin Li, Huijian Ge, Hengwei Jin, Youxiang Li
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12891-021-04400-8
Predicting the duration of sickness absence due to knee osteoarthritis: a prognostic model developed in a population-based cohort in Sweden
Cited by: 2
Author(s): Johanna Holm, Paolo Frumento, Gino Almondo, Katalin Gémes, Matteo Bottai, Kristina Alexanderson, Emilie Friberg, Kristin Farrants
Software Mentions: 6
Published: almost 3 years ago
10.3389/fmicb.2021.643025
Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition
Cited by: 18
Author(s): Hai Xiang, Jiankang Gan, Daoshu Zeng, Jing Li, Hui Yu, Huabin Zhao, Ying Yang, Shuo Tan, Gen Li, Chaowei Luo, Zhen Xie, Guiping Zhao, Hua Li
Software Mentions: 6
Published: about 3 years ago
10.7150/ijbs.32899
A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: over 5 years ago
10.1002/cam4.3251
Uridine phosphorylase 1 is a novel immune‐related target and predicts worse survival in brain glioma
Cited by: 16
Author(s): Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Shanshan Mei, Aijun Shan, Jiake Xu, Ying Yang
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pone.0235328
Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections
Cited by: 10
Author(s): Liang Dong, Joshua R. Watson, Sha Cao, Samuel Arregui, Vijay Saxena, John Ketz, Abduselam K. Awol, Daniel M. Cohen, Jeffrey M. Caterino, David S. Hains, Andrew L. Schwaderer
Software Mentions: 6
Published: almost 4 years ago
10.3389/fmicb.2021.673969
Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: almost 3 years ago
10.1128/mSphere.01261-20
Predominance of Atopobium vaginae at Midtrimester: a Potential Indicator of Preterm Birth Risk in a Nigerian Cohort
Cited by: 13
Author(s): Nkechi Martina Odogwu, Jun Chen, Chinedum Amara Onebunne, Patricio Jeraldo, Lu Yang, Stephen Johnson, Funmilola A. Ayeni, Marina Walther-Antonio, Oladapo Olayemi, Nicholas Chia, Akinyinka Omigbodun
Software Mentions: 6
Published: about 3 years ago
10.1186/s13046-020-01739-z
LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: over 3 years ago
10.1002/cam4.3133
Charactering tumor microenvironment reveals stromal‐related transcription factors promote tumor carcinogenesis in gastric cancer
Cited by: 14
Author(s): Haining Liu, Shujuan Ni, Hanbo Wang, Qiongyan Zhang, Wei-Hung Weng
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12911-019-0991-9
Identifying undetected dementia in UK primary care patients: a retrospective case-control study comparing machine-learning and standard epidemiological approaches
Cited by: 31
Author(s): Elizabeth Ford, Philip Rooney, Seb Oliver, Richard Hoile, P. D. Hurley, Sube Banerjee, Harm van Marwijk, Jackie A Cassell
Software Mentions: 6
Published: over 4 years ago
10.1186/s12911-017-0518-1
Word2Vec inversion and traditional text classifiers for phenotyping lupus
Cited by: 49
Author(s): Clayton A. Turner, Alexander Jacobs, Cassios K. Marques, Jim C. Oates, Diane L. Kamen, Paul E. Anderson, Jihad S. Obeid
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pone.0251385
Improving the diagnostic recognition of thoracic endometriosis: Spotlight on a new histo-morphological indicator
Cited by: 1
Author(s): Okechukwu Charles Okafor, N Ezemba, Nnaemeka Thaddeus Onyishi, Kevin Nwabueze Ezike
Software Mentions: 6
Published: about 3 years ago
10.1186/s12880-021-00581-9
Radiomic model for differentiating parotid pleomorphic adenoma from parotid adenolymphoma based on MRI images
Cited by: 11
Author(s): Lele Song, Shun-jun Chen, Wang Chen, Zhan Shi, Xiaodong Wang, Lina Song, Chen Diansen
Software Mentions: 6
Published: about 3 years ago
10.1186/1471-2253-14-59
The impact of performance status and comorbidities on the short-term prognosis of very elderly patients admitted to the ICU
Cited by: 42
Author(s): Fernando Godinho Zampieri, Fernando Colombari
Software Mentions: 6
Published: almost 10 years ago
10.3389/fgene.2020.565206
Identification and Validation of Two Lung Adenocarcinoma-Development Characteristic Gene Sets for Diagnosing Lung Adenocarcinoma and Predicting Prognosis
Cited by: 10
Author(s): Cheng Liu, Xiang Li, Huili Shao, Dan Li
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0177894
Predictive features of chronic kidney disease in atypical haemolytic uremic syndrome
Cited by: 14
Author(s): Matthieu Jamme, Quentin Raimbourg, Dominique Chauveau, Amélie Seguin, Claire Presne, Pierre Perez, P. Gobert, Alain Wynckel, Patrice François, Yahsou Delmas, Christiane Mousson, Aude Servais, Laurence Vrigneaud, Agnès Veyradier, Éric Rondeau, Paul Coppo
Software Mentions: 6
Published: about 7 years ago
10.3389/fmicb.2019.02120
Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: over 4 years ago
10.1515/med-2019-0067
Prediction of recurrence-associated death from localized prostate cancer with a charlson comorbidity index–reinforced machine learning model
Cited by: 12
Author(s): Yi-Ting Lin, Michael Tian-Shyug Lee, Yen-Chun Huang, Chih-Kuang Liu, Yi-Tien Li, Mingchih Chen
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-86735-9
Machine learning is the key to diagnose COVID-19: a proof-of-concept study
Cited by: 17
Author(s): Cédric Gangloff, Sonia Rafi, Guillaume Bouzillé, Louis Soulat, Marc Cuggia
Software Mentions: 6
Published: about 3 years ago
10.1038/s41598-021-81506-y
Deep learning predicts postsurgical recurrence of hepatocellular carcinoma from digital histopathologic images
Cited by: 25
Author(s): Rikiya Yamashita, Long Jin, Atif Saleem, Daniel L. Rubin, Jeanne Shen
Software Mentions: 6
Published: over 3 years ago
10.1186/s12879-021-06495-9
Clinical features and death risk factors in COVID-19 patients with cancer: a retrospective study
Cited by: 2
Author(s): Yi Zhou, Qiao Yang, Jun Ye, Xiao‐Cheng Wu, Xianhua Hou, Yimei Feng, Bangyu Luo, Jixi Li, Guihong Yang, Lingchen Li, Xiu Yang, Bin Wang, Songtao Zhao, Li Li, Qi Li, Zhi Xu, Hao Wu, Jianping Sun
Software Mentions: 6
Published: almost 3 years ago
10.1371/journal.pone.0225556
IL-18/IL-37/IP-10 signalling complex as a potential biomarker for discriminating active and latent TB
Cited by: 20
Author(s): Sebastian Wawrocki, Michał Seweryn, Grzegorz Kielnierowski, Wiesława Rudnicka, Marcin Włodarczyk, Magdalena Druszczyńska
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-021-92933-2
Exhaled volatilome analysis as a useful tool to discriminate asthma with other coexisting atopic diseases in women of childbearing age
Cited by: 6
Author(s): Rosa Alba Sola Martínez, Gema Lozano‐Terol, Julia Gallego‐Jara, Eva Morales, Esther Cantero‐Cano, Manuel Rolandi Sánchez-Solís, Luis García‐Marcos, Pedro Jiménez‐Guerrero, José Antonio Noguera-Velasco, Manuel Cánovas Díaz, Teresa De Diego
Software Mentions: 6
Published: almost 3 years ago
10.1371/journal.pone.0254366
A clinical prediction model to identify children at risk for revisits with serious illness to the emergency department: A prospective multicentre observational study
Cited by: 5
Author(s): Ruud Nijman, Dorine H. Borensztajn, Joany M Zachariasse, Carine Hajema, Paulo Freitas, Susanne Greber‐Platzer, Frank J Smit, Claudio F. Alves, Johan van der Lei, Ewout W. Steyerberg, Ian Maconochie, Henriëtte A. Moll
Software Mentions: 6
Published: almost 3 years ago
10.1038/s41598-020-70703-w
Peripheral serum metabolomic profiles inform central cognitive impairment
Cited by: 21
Author(s): Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider‐Paisley, Gregory Louie, Siamak Mahmoudian Dehkordi, Colette Blach, Rebecca Baillie, Xianlin Han, Philip L. De Jager, David A. Bennett, Rima Kaddurah‐Daouk, Jia Wang
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0193929
Association of gadolinium-enhanced magnetic resonance imaging with hepatic fibrosis and inflammation in primary sclerosing cholangitis
Cited by: 7
Author(s): Sarah Keller, Annette Aigner, Roman Zenouzi, Anne C. Kim, Arnoud C. Meijer, Sören Weidemann, Till Krech, Ansgar W. Lohse, Gerhard Adam, Christoph Schramm, Jin Yamamura
Software Mentions: 6
Published: about 6 years ago
10.1186/s13071-018-3281-y
A novel entomological index, Aedes aegypti Breeding Percentage, reveals the geographical spread of the dengue vector in Singapore and serves as a spatial risk indicator for dengue
Cited by: 31
Author(s): Janet Ong, Xu Liu, Jayanthi Rajarethinam, Grace Yap, Derek Ho, Lee Ching Ng
Software Mentions: 6
Published: over 5 years ago
10.1186/s40644-021-00408-4
High resolution MRI-based radiomic nomogram in predicting perineural invasion in rectal cancer
Cited by: 17
Author(s): Yan-Song Yang, Yong-Juan Qiu, Gengbin Zheng, Hai‐Peng Gong, Yubin Ge, Yifei Zhang, Feng Feng, Yuetao Wang
Software Mentions: 6
Published: almost 3 years ago