Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2018.08.067

https://doi.org/10.1016/j.cell.2018.08.067

Cited by: 396
Author(s): James Kinchen, Hannah H. Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar, Eshita Sharma, Quin F. Wills, Rory Bowden, Felix Clemens Richter, David Ahern, Kamal D. Puri, Jill Hénault, François G. Gervais, Hashem Koohy, Alison Simmons
Published: over 5 years ago

Software Mentions 11

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555