cran: randomForest | Projects | Ecosyste.ms: Papers

10.1186/s12863-017-0576-5

Evaluation of methods and marker Systems in Genomic Selection of oil palm (Elaeis guineensis Jacq.)
Cited by: 14
Author(s): Qi Bin Kwong, Chee Keng Teh, Ai Ling Ong, Fook Tim Chew, Sean Mayes, Harikrishna Kulaveerasingam, Martti T. Tammi, Suat Hui Yeoh, David R. Appleton, Jennifer Ann Harikrishna
Software Mentions: 7
Published: over 6 years ago

10.3389/fimmu.2020.599637

Fecal IgA, Antigen Absorption, and Gut Microbiome Composition Are Associated With Food Antigen Sensitization in Genetically Susceptible Mice
Cited by: 17
Author(s): Johanna M. Smeekens, Brandi T. Johnson‐Weaver, Andrew Hinton, M. Andrea Azcárate-Peril, Timothy P. Moran, R.M. Immormino, Janelle Kesselring, Erin C. Steinbach, Kelly Orgel, Herman F. Staats, A. Wesley Burks, Peter J. Mucha, Martin T. Ferris, Michael D. Kulis
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0147871

A TCRβ Repertoire Signature Can Predict Experimental Cerebral Malaria
Cited by: 7
Author(s): Encarnita Mariotti‐Ferrandiz, Hang-Phuong Pham, Sophie Dulauroy, Olivier Gorgette, David Klatzmann, Pierre‐André Cazenave, Sylviane Pied, Adrien Six
Software Mentions: 7
Published: over 8 years ago

10.3390/s20205879

A Shape Approximation for Medical Imaging Data
Cited by: 2
Author(s): Shih‐Feng Huang, Yung-Hsuan Wen, Chi-Hsiang Chu, Chien‐Chin Hsu
Software Mentions: 7
Published: over 3 years ago

10.1126/sciadv.aaz5373

Freezing and water availability structure the evolutionary diversity of trees across the Americas
Cited by: 47
Author(s): Rocío Cortés, R. Toby Pennington, Tim R. Baker, Fernanda Coelho de Souza, Danilo M. Neves, Charles C. Davis, Juan J. Armestó, Ary Olivera-Filho, Kyle G. Dexter
Software Mentions: 7
Published: about 4 years ago

10.1098/rsos.200139

Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology
Cited by: 23
Author(s): Lorène Jeantet, Víctor Planas‐Bielsa, Simon Benhamou, Sébastien Geiger, Jordan Martin, Flora Siegwalt, Pierre Lelong, Julie Gresser, Denis Etienne, Gaëlle Hiélard, Alexandre Arqué, Sidney Régis, Nicolas Lecerf, Cédric Frouin, Abdelwahab Benhalilou, Céline Murgale, Thomas Maillet, Lucas Andreani, Guilhem Campistron, Hélène Delvaux, Christelle Guyon, Sabine Richard, Fabien Lefèbvre, Nathalie Aubert, Caroline Habold, Yvon Le Maho, Damien Chevallier
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0097678

Evaluation of Toxicogenomics Approaches for Assessing the Risk of Nongenotoxic Carcinogenicity in Rat Liver
Cited by: 16
Author(s): Johannes Eichner, Clemens Wrzodek, Michael Roemer, Heidrun Ellinger‐Ziegelbauer, Andreas Zell
Software Mentions: 7
Published: about 10 years ago

10.3389/fgene.2021.710485

Evaluations of Genomic Prediction and Identification of New Loci for Resistance to Stripe Rust Disease in Wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Vipin Tomar, G. S. Dhillon, Daljit Singh, Ravi P. Singh, Jesse Poland, Anis Ahmad Chaudhary, Pradeep Kumar Bhati, Arun Kumar Joshi, Uttam Kumar
Software Mentions: 7
Published: over 2 years ago

10.3389/fgene.2019.00579

A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
Cited by: 107
Author(s): Yi‐Hui Zhou, Paul J. Gallins
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0245437

Identifying intentional injuries among children and adolescents based on Machine Learning
Cited by: 1
Author(s): Xiling Yin, Dan Ma, Kejing Zhu, Deyun Li
Software Mentions: 7
Published: over 3 years ago

10.3390/jcm9124131

Predicting the Response of High Frequency Spinal Cord Stimulation in Patients with Failed Back Surgery Syndrome: A Retrospective Study with Machine Learning Techniques
Cited by: 5
Author(s): Lisa Goudman, Jean‐Pierre Van Buyten, Ann De Smedt, Iris Smet, Marieke Devos, Ali Jerjir, Maarten Moens
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0185380

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits
Cited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: over 6 years ago

10.1080/0886022X.2020.1810068

Prediction models for acute kidney injury in patients with gastrointestinal cancers: a real-world study based on Bayesian networks
Cited by: 14
Author(s): Yang Li, Xiaohong Chen, Ziyan Shen, Yimei Wang, Jiayue Hu, Yunlu Zhang, Jiacheng Xu, Xiaoqiang Ding
Software Mentions: 7
Published: over 4 years ago

10.3389/fnagi.2021.605970

Immune Profiling of Parkinson’s Disease Revealed Its Association With a Subset of Infiltrating Cells and Signature Genes
Cited by: 12
Author(s): Xi Zhang, Zhihua Shao, Sutong Xu, Qiulu Liu, Chenming Liu, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 7
Published: over 3 years ago

10.1186/s12967-021-02720-w

Development and validation of a prognostic COVID-19 severity assessment (COSA) score and machine learning models for patient triage at a tertiary hospital
Cited by: 38
Author(s): Verena Schöning, Evangelia Liakoni, Christine Baumgartner, Aristomenis K. Exadaktylos, Wolf E. Hautz, Andrew Atkinson, Felix Hammann
Software Mentions: 7
Published: over 3 years ago

10.1111/jpy.12767

Quantitative comparison of taxa and taxon concepts in the diatom genus Fragilariopsis : a case study on using slide scanning, multiexpert image annotation, and image analysis in taxonomy 1
Cited by: 9
Author(s): Bánk Beszteri, Claire S. Allen, Gastón O. Almandoz, Leanne K. Armand, María Ángeles Bárcena, Hannelore Cantzler, Xavier Crosta, Oliver Esper, Richard W. Jordan, Gerhard Kauer, Christine Klaas, Michael Kloster, Amy Leventer, Jennifer Pike, Andrés S. Rigual-Hernández
Software Mentions: 7
Published: over 5 years ago

10.1186/s12967-019-1909-0

ALS blood expression profiling identifies new biomarkers, patient subgroups, and evidence for neutrophilia and hypoxia
Cited by: 38
Author(s): William R. Swindell, Colin Kruse, Edward O. List, Darlene E. Berryman, John J. Kopchick
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0188660

An analytical approach to sparse telemetry data
Cited by: 3
Author(s): Michael J. Kinney, David Kacev, Suzanne Kohin, Tomoharu Eguchi
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0199648

Outcomes of early NIH-funded investigators: Experience of the National Institute of Allergy and Infectious Diseases
Cited by: 10
Author(s): Patricia A. Haggerty, Matthew J. Fenton
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0102457

The “Bear” Essentials: Actualistic Research on Ursus arctos arctos in the Spanish Pyrenees and Its Implications for Paleontology and Archaeology
Cited by: 62
Author(s): Maite Arilla, Jordi Rosell, Ruth Blasco, Manuel Domínguez‐Rodrigo, Travis Rayne Pickering
Software Mentions: 7
Published: almost 10 years ago

10.3390/healthcare9030268

Measuring the Response Performance of U.S. States against COVID-19 Using an Integrated DEA, CART, and Logistic Regression Approach
Cited by: 11
Author(s): Yawei Xu, Yong Shin Park, Ju Dong Park
Software Mentions: 7
Published: about 3 years ago

10.3390/jpm11060496

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models
Cited by: 10
Author(s): Mahdi Jalili, Martin Scharm, Olaf Wolkenhauer, Mehdi Damaghi, Ali Salehzadeh‐Yazdi
Software Mentions: 7
Published: almost 3 years ago

10.1186/s12859-021-04049-z

R.ROSETTA: an interpretable machine learning framework
Cited by: 15
Author(s): Mateusz Garbulowski, Klev Diamanti, Karolina Smolińska, Nicholas Baltzer, Patricia Stoll, Susanne Bornelöv, Aleksander Øhrn, Lars Feuk, Jan Komorowski
Software Mentions: 7
Published: about 3 years ago

10.15252/msb.20209652

A substrate‐based ontology for human solute carriers
Cited by: 24
Author(s): Eva Meixner, Ulrich Goldmann, Vitaly Sedlyarov, Stefania Scorzoni, Manuele Rebsamen, Enrico Gottardi, Giulio Superti‐Furga
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12859-017-1711-z

GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles
Cited by: 8
Author(s): Michael Klein, David F. Stern, Hongyu Zhao
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pcbi.1006826

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
Cited by: 65
Author(s): David G.P. van IJzendoorn, Károly Szuhai, Inge H. Briaire-de Bruijn, Marie Kostine, Marieke L. Kuijjer, Judith V.M.G. Bovée
Software Mentions: 7
Published: about 5 years ago

10.3390/molecules26102854

Detection of Paratuberculosis in Dairy Herds by Analyzing the Scent of Feces, Alveolar Gas, and Stable Air
Cited by: 1
Author(s): M. Weber, Peter Gierschner, Anne Klassen, Elisa Kasbohm, Jochen K. Schubert, Wolfram Miekisch, Petra Reinhold, Heike Köhler
Software Mentions: 7
Published: about 3 years ago

10.1186/s10020-019-0093-2

IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis
Cited by: 12
Author(s): Jing Liu, Qi Zhu, Jing Han, Hui Zhang, Yuan Li, Yanyun Ma, Dongyi He, Jianxin Gu, Xiaodong Zhou, John D. Reveille, Li Jin, Hejian Zou, Shifang Ren, Jiucun Wang
Software Mentions: 7
Published: almost 5 years ago

10.3390/ijms21124236

Differential Urinary Proteome Analysis for Predicting Prognosis in Type 2 Diabetes Patients with and without Renal Dysfunction
Cited by: 25
Author(s): Hee‐Sung Ahn, Jong Ho Kim, Hee Jong Jeong, Jeesuk Yu, Jeonghun Yeom, Sang Heon Song, Sang Soo Kim, In Joo Kim, Kyunggon Kim
Software Mentions: 7
Published: almost 4 years ago

10.3390/molecules24162977

VOC Profiles of Saliva in Assessment of Halitosis and Submandibular Abscesses Using HS-SPME-GC/MS Technique
Cited by: 32
Author(s): Fernanda Monedeiro, Maciej Milanowski, Ileana-Andreea Raţiu, Hubert Zmysłowski, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 7
Published: almost 5 years ago

10.1002/ece3.2824

Canada lynx use of burned areas: Conservation implications of changing fire regimes
Cited by: 26
Author(s): Carmen Vanbianchi, Melanie A. Murphy, Karen E. Hodges
Software Mentions: 7
Published: about 7 years ago

10.3390/ijerph17030778

Social Support and Subclinical Coronary Artery Disease in Middle-Aged Men and Women: Findings from the Pilot of Swedish CArdioPulmonary bioImage Study
Cited by: 1
Author(s): Demir Djekic, Erika Fagman, Oskar Angerås, George Lappas, Kjell Torén, Göran Bergström, Annika Rosengren
Software Mentions: 7
Published: over 4 years ago

10.7150/ijms.51235

Machining learning predicts the need for escalated care and mortality in COVID-19 patients from clinical variables
Cited by: 29
Author(s): Wei Hou, Zirun Zhao, Anne Chen, Haifang Li, Timothy Q. Duong
Software Mentions: 7
Published: over 3 years ago

10.3389/fpls.2021.693739

Comparative Metabolomics of Fruits and Leaves in a Hyperdiverse Lineage Suggests Fruits Are a Key Incubator of Phytochemical Diversification
Cited by: 11
Author(s): Gerald Schneider, Diego Salazar, Sherry B. Hildreth, Richard Helm, Susan R. Whitehead
Software Mentions: 7
Published: over 2 years ago

10.1186/s40168-018-0595-0

Skin and gut microbiomes of a wild mammal respond to different environmental cues
Cited by: 38
Author(s): Anton Lavrinienko, Eugene Tukalenko, Tapio Mappes, Phillip C. Watts
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2019.01246

Temporal Dynamics of the Sap Microbiome of Grapevine Under High Pierce’s Disease Pressure
Cited by: 43
Author(s): Elizabeth Deyett, Philippe E. Rolshausen
Software Mentions: 7
Published: over 4 years ago

10.3390/ijns6010016

Reducing False-Positive Results in Newborn Screening Using Machine Learning
Cited by: 27
Author(s): Gang Peng, Yishuo Tang, Tina M. Cowan, Gregory M. Enns, Hongyu Zhao, Curt Scharfe
Software Mentions: 7
Published: about 4 years ago

10.3390/diagnostics11091718

Comparison of Different Machine Learning Classifiers for Glaucoma Diagnosis Based on Spectralis OCT
Cited by: 15
Author(s): Chaowei Wu, Hsiang-Li Shen, Chi-Jie Lu, Ssu-Han Chen, Hsin‐Yi Chen
Software Mentions: 7
Published: over 2 years ago

10.1371/journal.pcbi.1008720

Impact of between-tissue differences on pan-cancer predictions of drug sensitivity
Cited by: 4
Author(s): John P. Lloyd, Matthew B. Soellner, Sofía D. Merajver, Jun Z. Li
Software Mentions: 7
Published: about 3 years ago

10.3390/genes12081179

Dysregulation of Synaptic Signaling Genes Is Involved in Biology of Uterine Leiomyoma
Cited by: 2
Author(s): Jovan Krsteski, Mario Gorenjak, Igor But, Maja Pakiž, Uroš Potočnik
Software Mentions: 7
Published: almost 3 years ago

10.1038/s41396-020-0690-7

Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice
Cited by: 20
Author(s): Meriem Belheouane, Marie Vallier, Aleksa Čepić, Chin-Wan Chung, Saleh M. Ibrahim, John F. Baines
Software Mentions: 7
Published: almost 4 years ago

10.34133/2020/4216373

Semantic Segmentation of Sorghum Using Hyperspectral Data Identifies Genetic Associations
Cited by: 24
Author(s): Chenyong Miao, Alejandro Pages, Zheng Xu, Eric Rodene, Jinliang Yang, James C. Schnable
Software Mentions: 7
Published: over 4 years ago

10.1186/1751-0473-7-13

MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads
Cited by: 4
Author(s): Alexander Tyakht, Anna Popenko, Maxim S. Belenikin, Ilya Altukhov, Alexander V. Pavlenko, Elena S. Kostryukova, Oksana V. Selezneva, Andrei K. Larin, Irina Y. Karpova, Dmitry Alexeev
Software Mentions: 7
Published: over 11 years ago

10.1371/journal.pone.0164230

Blood Plasma-Derived Anti-Glycan Antibodies to Sialylated and Sulfated Glycans Identify Ovarian Cancer Patients
Cited by: 17
Author(s): Tatiana Pochechueva, Alexander Chinarev, Andreas Schoetzau, André Fedier, Nicolai V. Bovin, Neville F. Hacker, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 7
Published: over 7 years ago

10.1038/s42003-020-01318-0

Lung gene expression signatures suggest pathogenic links and molecular markers for pulmonary tuberculosis, adenocarcinoma and sarcoidosis
Cited by: 15
Author(s): Qiyao Chai, Zhe Lü, Zhidong Liu, Yanzhao Zhong, Fuzhen Zhang, Changgen Qiu, Bingxi Li, Jing Wang, Lingqiang Zhang, Yu Pang, Cui Hua Liu
Software Mentions: 7
Published: over 3 years ago

10.1128/mBio.00630-18

Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors
Cited by: 34
Author(s): Marc A. Sze, Patrick D. Schloss
Software Mentions: 7
Published: almost 6 years ago

10.3389/fonc.2020.603717

Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic Adenoma
Cited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: about 3 years ago

10.3390/cancers13092102

Integration of Urinary EN2 Protein & Cell-Free RNA Data in the Development of a Multivariable Risk Model for the Detection of Prostate Cancer Prior to Biopsy
Cited by: 4
Author(s): Shea P. Connell, Robert Mills, Hardev Pandha, Richard Morgan, Christopher S. Cooper, Jeremy Clark, Daniel Brewer
Software Mentions: 7
Published: about 3 years ago

10.3390/metabo9020024

Metabolic Alterations in Male-Sterile Potato as Compared to Male-Fertile
Cited by: 13
Author(s): М. Ф. Шишова, Roman Puzanskiy, О. А. Гаврилова, Shamuhommed Kurbanniazov, Kirill N. Demchenko, Vladislav V. Yemelyanov, Galina Pendinen, А. Л. Шаварда, Т. А. Гавриленко
Software Mentions: 7
Published: over 5 years ago

10.3390/s19071588

Reducing False Arrhythmia Alarms Using Different Methods of Probability and Class Assignment in Random Forest Learning Methods
Cited by: 9
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski
Software Mentions: 7
Published: about 5 years ago

10.3390/cancers13164087

Prognostic Value of Procalcitonin, C-Reactive Protein, and Lactate Levels in Emergency Evaluation of Cancer Patients with Suspected Infection
Cited by: 5
Author(s): Patrick Chaftari, Aiham Qdaisat, Anne-Marie Chaftari, Julian Maamari, Ziyi Li, Florea Lupu, Issam Raad, Ray Hachem, George A. Calin, Sai Ching Jim Yeung
Software Mentions: 7
Published: almost 3 years ago

10.1038/s41598-020-75473-z

Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
Cited by: 16
Author(s): Satoru Kawakita, Jennifer L. Beaumont, Vadim Jucaud, Matthew J Everly
Software Mentions: 7
Published: over 3 years ago

10.1007/s10994-019-05848-5

An evaluation of machine-learning for predicting phenotype: studies in yeast, rice, and wheat
Cited by: 79
Author(s): Nastasiya F. Grinberg, Oghenejokpeme I. Orhobor, Ross D. King
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-67629-8

Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12864-019-6275-z

Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode tolerance
Cited by: 29
Author(s): Waltram Ravelombola, Jun Qin, Ainong Shi, Liana Nice, Yong Bao, Aaron J. Lorenz, J. H. Orf, Nevin D. Young, Senyu Chen
Software Mentions: 7
Published: over 4 years ago

10.7717/peerj.11105

The biosonar of the boto: evidence of differences among species of river dolphins (Iniaspp.) from the Amazon
Cited by: 2
Author(s): Jéssica Fernandes de Melo, Thiago Orion Simões Amorim, Mariana Paschoalini, Artur Andriolo
Software Mentions: 7
Published: about 3 years ago

10.3390/molecules26113475

Unveiling Putative Functions of Mucus Proteins and Their Tryptic Peptides in Seven Gastropod Species Using Comparative Proteomics and Machine Learning-Based Bioinformatics Predictions
Cited by: 13
Author(s): Viroj Tachapuripunya, Sittiruk Roytrakul, Pramote Chumnanpuen, Teerasak E-kobon
Software Mentions: 7
Published: almost 3 years ago

10.7717/peerj.7969

Machine learning analysis to identify the association between risk factors and onset of nosocomial diarrhea: a retrospective cohort study
Cited by: 4
Author(s): Ken Kurisu, Kazuhiro Yoshiuchi, Kei Ogino, Toshimi Oda
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-019-47797-y

Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae
Cited by: 3
Author(s): John P. Lloyd, Megan J. Bowman, Christina B. Azodi, Rosalie P. Sowers, Gaurav D. Moghe, Kevin L. Childs, Shin-Han Shiu
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0256929

Modelling the effects of the repellent scent marks of pollinators on their foraging efficiency and the plant-pollinator community
Cited by: 0
Author(s): Elise Verrier, Emmanuelle Baudry, Carmen Bessa‐Gomes
Software Mentions: 6
Published: over 2 years ago

10.3389/fmicb.2019.02120

Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-019-54519-x

TSLRF: Two-Stage Algorithm Based on Least Angle Regression and Random Forest in genome-wide association studies
Cited by: 4
Author(s): Jiali Sun, Qingtai Wu, Dafeng Shen, Yang Wen, Fengrong Liu, Yu Tang Gao, Jie Ding, Jin Zhang
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0107801

A Robust and Accurate Method for Feature Selection and Prioritization from Multi-Class OMICs Data
Cited by: 31
Author(s): Vittorio Fortino, Pia Anneli Sofia Kinaret, Nanna Fyhrquist, Harri Alenius, Dario Greco
Software Mentions: 6
Published: over 9 years ago

10.3390/biom10071041

Untargeted LC-MS Metabolomics Differentiates Between Virulent and Avirulent Clinical Strains of Pseudomonas aeruginosa
Cited by: 18
Author(s): Tobias Depke, Janne G. Thöming, Adrian Kordes, Susanne Häußler, Mark Brönstrup
Software Mentions: 6
Published: almost 4 years ago

10.1155/2015/670691

Statistical Methods for Establishing Personalized Treatment Rules in Oncology
Cited by: 16
Author(s): Junsheng Ma, Brian P. Hobbs, Francesco C. Stingo
Software Mentions: 6
Published: over 9 years ago

10.3389/fmicb.2021.673969

Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: almost 3 years ago

10.1038/s41598-019-48118-z

Mapping behaviorally relevant light pollution levels to improve urban habitat planning
Cited by: 16
Author(s): Aaron E. Schirmer, Caleb Gallemore, Ting Liu, Seth B. Magle, Elisabeth DiNello, Humerah Ahmed, Thomas Gilday
Software Mentions: 6
Published: almost 5 years ago

10.1155/2020/8810143

An Efficient and Effective Model to Handle Missing Data in Classification
Cited by: 8
Author(s): Kamran Mehrabani-Zeinabad, Marziyeh Doostfatemeh, Seyyed Mohammad Taghi Ayatollahi
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-018-27322-3

Costs of injury for scent signalling in a strepsirrhine primate
Cited by: 18
Author(s): Rachel L. Harris, Marylène Boulet, Kathleen E. Grogan, Christine M. Drea
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmed.2021.744295

A 41-Gene Pair Signature for Predicting the Pathological Response of Locally Advanced Rectal Cancer to Neoadjuvant Chemoradiation
Cited by: 1
Author(s): Zhengfa Xue, Shuxin Yang, Yun Luo, Hao Cai, Mingwei He, Youping Ding, Lei Lei, Peng Wei, Hong Guan, You Guo
Software Mentions: 6
Published: over 2 years ago

10.1371/journal.pone.0186025

Using worldwide edaphic data to model plant species niches: An assessment at a continental extent
Cited by: 67
Author(s): Santiago José Elías Velazco, Franklin Galvão, Fabricio Villalobos, Paulo de Marco Júnior
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.8844

Dynamics of ammonia oxidizers and denitrifiers in response to compost addition in black soil, Northeast China
Cited by: 8
Author(s): Zhihui Yang, Yupeng Guan, Ayodeji Bello, Yanxiang Wu, Jiayi Ding, Leiqi Wang, Yuqing Ren, Guangxin Chen, Wei Yang
Software Mentions: 6
Published: about 4 years ago

10.1093/aob/mcab007

Evolution of floral scent in relation to self-incompatibility and capacity for autonomous self-pollination in the perennial herb Arabis alpina
Cited by: 15
Author(s): Hampus Petrén, Per Toräng, Jon Ågren, Magne Friberg
Software Mentions: 6
Published: over 3 years ago

10.1186/s12938-017-0416-x

Empirical study of seven data mining algorithms on different characteristics of datasets for biomedical classification applications
Cited by: 37
Author(s): Yiyan Zhang, Yi Xin, Li Qin, Jianshe Ma, Shuai Li, Xiaodan Lv, Weiqi Lv
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-017-08235-z

Discrimination of plant root zone water status in greenhouse production based on phenotyping and machine learning techniques
Cited by: 21
Author(s): Doudou Guo, J.A. de Juan, Liu Chang, Zhang Jing-jin, Dan Huang
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-017-13056-1

A machine-learning heuristic to improve gene score prediction of polygenic traits
Cited by: 63
Author(s): Guillaume Paré, Mao S, Wei Q. Deng
Software Mentions: 6
Published: over 6 years ago

10.3389/fgene.2021.659650

Unraveling City-Specific Microbial Signatures and Identifying Sample Origins for the Data From CAMDA 2020 Metagenomic Geolocation Challenge
Cited by: 1
Author(s): Runzhi Zhang, Dorothy Ellis, Alejandro R. Walker, Susmita Datta
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pone.0073938

A Toxicogenomic Approach for the Prediction of Murine Hepatocarcinogenesis Using Ensemble Feature Selection
Cited by: 16
Author(s): Johannes Eichner, Nadine Kossler, Clemens Wrzodek, Arno Kalkuhl, Dorthe Bach Toft, Nina Ostenfeldt, V. Espley Richard, Andreas Zell
Software Mentions: 6
Published: over 10 years ago

10.1186/s12859-018-2344-6

Priority-Lasso: a simple hierarchical approach to the prediction of clinical outcome using multi-omics data
Cited by: 32
Author(s): Simon Klau, Vindi Jurinović, Roman Hornung, Tobias Herold, Anne‐Laure Boulesteix
Software Mentions: 6
Published: over 5 years ago

10.1038/sdata.2018.227

Global distribution data for cattle, buffaloes, horses, sheep, goats, pigs, chickens and ducks in 2010
Cited by: 298
Author(s): Marius Gilbert, G. Nicolas, Giuseppina Cinardi, Thomas Van Boeckel, Sophie Vanwambeke, William Wint, Timothy P. Robinson
Software Mentions: 6
Published: over 5 years ago

10.1038/srep26947

Variation in serum biomarkers with sex and female hormonal status: implications for clinical tests
Cited by: 29
Author(s): Jordan M. Ramsey, Jason D. Cooper, Brenda W. J. H. Penninx, Sabine Bahn
Software Mentions: 6
Published: almost 8 years ago

10.3389/fgene.2021.667358

Improving Genomic Prediction Using High-Dimensional Secondary Phenotypes
Cited by: 3
Author(s): Bader Arouisse, Tom P.J.M. Theeuwen, F.A. van Eeuwijk, Willem Kruijer
Software Mentions: 6
Published: almost 3 years ago

10.1186/1471-2105-8-328

GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest
Cited by: 169
Author(s): Ramón Dı́az-Uriarte
Software Mentions: 6
Published: over 16 years ago

10.1186/s13065-020-00731-0

Relaxometric learning: a pattern recognition method for T2 relaxation curves based on machine learning supported by an analytical framework
Cited by: 4
Author(s): Yasuhiro Date, Feifei Wei, Yuuri Tsuboi, Kengo Ito, Kenji Sakata, Jun Kikuchi
Software Mentions: 6
Published: about 3 years ago

10.3389/fgene.2018.00237

Genomic Prediction of Breeding Values Using a Subset of SNPs Identified by Three Machine Learning Methods
Cited by: 109
Author(s): Bo Li, Nanxi Zhang, You‐Gan Wang, Andrew W. George, Antônio Reverter, Yutao Li
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0222733

BWGS: A R package for genomic selection and its application to a wheat breeding programme
Cited by: 30
Author(s): Gilles Charmet, Louis-Gautier Tran, Jérôme Auzanneau, Renaud Rincent, Sophie Bouchet
Software Mentions: 6
Published: about 4 years ago

10.3389/fgene.2019.01111

Translated Long Non-Coding Ribonucleic Acid ZFAS1 Promotes Cancer Cell Migration by Elevating Reactive Oxygen Species Production in Hepatocellular Carcinoma
Cited by: 17
Author(s): Zhi-Wei Guo, Yijun Meng, Xiang-Ming Zhai, Chen Xie, Na Zhao, Min Li, Chen Zhou, Kun Li, Tiancai Liu, Xu Yang, Yangyang Wu
Software Mentions: 6
Published: over 4 years ago

10.1186/1752-0509-8-S4-S5

Network-based biomarkers enhance classical approaches to prognostic gene expression signatures
Cited by: 18
Author(s): Rebecca Barter, Sarah-Jane Schramm, Graham J. Mann, Jean Yee Hwa Yang
Software Mentions: 6
Published: over 9 years ago

10.3389/fgene.2021.653474

Identifying ceRNA Networks Associated With the Susceptibility and Persistence of Atrial Fibrillation Through Weighted Gene Co-Expression Network Analysis
Cited by: 6
Author(s): Yaozhong Liu, Na Liu, Fan Bai, Qiming Liu
Software Mentions: 6
Published: almost 3 years ago

10.3389/fchem.2021.659656

iMAP: A Web Server for Metabolomics Data Integrative Analysis
Cited by: 4
Author(s): Di Zhou, Wen-Hong Zhu, Tao Sun, Yang Wang, Yi Chi, Tianlu Chen, Jingchao Lin
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0232534

A model for the assessment of bluetongue virus serotype 1 persistence in Spain
Cited by: 8
Author(s): Cecilia Aguilar-Vega, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0099926

Insights from Computational Modeling in Inflammation and Acute Rejection in Limb Transplantation
Cited by: 23
Author(s): Dolores Wolfram, Ravi Starzl, Hubert Hackl, Derek Barclay, Theresa Hautz, Bettina Zelger, Gerald Brandacher, W. P. Andrew Lee, Nadine Eberhart, Yoram Vodovotz, Johann Pratschke, Gerhard Pierer, Stefan Schneeberger
Software Mentions: 6
Published: almost 10 years ago

10.7717/peerj.11972

The modeled distribution of corals and sponges surrounding the Salas y Gómez and Nazca ridges with implications for high seas conservation
Cited by: 6
Author(s): Samuel E. Georgian, Lance E. Morgan, Daniel Wagner
Software Mentions: 6
Published: over 2 years ago

10.1371/journal.pone.0028966

Understanding and Classifying Metabolite Space and Metabolite-Likeness
Cited by: 55
Author(s): Julio E. Peironcely, Theo H. Reijmers, L Coulier, Andreas Bender, Thomas Hankemeier
Software Mentions: 6
Published: over 12 years ago

10.1089/cmb.2019.0320

Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Cited by: 8
Author(s): Jeļena Fiošina, Maksims Fiošins, Stefan Bonn
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-66369-z

High Oscillospira abundance indicates constipation and low BMI in the Guangdong Gut Microbiome Project
Cited by: 66
Author(s): Yi-ran Chen, Huimin Zheng, Guoxia Zhang, Fang-lan Chen, Lidan Chen, Zhaoying Yang
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pgen.1006563

Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing
Cited by: 163
Author(s): Rui Zhang, Patricia Deng, Jacobson Dionna, Jin Billy Li
Software Mentions: 6
Published: over 7 years ago

10.1186/s12915-021-01147-5

Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model
Cited by: 13
Author(s): Hisayo Ono, Yasuhito Arai, Eisaku Furukawa, Daichi Narushima, Tetsuya Matsuura, Hiromi Nakamura, Daisuke Shiokawa, Masaya Nagai, Toshio Imai, Koshi Mimori, Koji Okamoto, Yoshitaka Hippo, Tatsuhiro Shibata, Mamoru Kato
Software Mentions: 6
Published: over 2 years ago

10.1186/s12968-015-0217-y

Mapping tissue inhomogeneity in acute myocarditis: a novel analytical approach to quantitative myocardial edema imaging by T2-mapping
Cited by: 51
Author(s): Bettina Baeßler, Frank Schaarschmidt, Anastasia Dick, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 6
Published: over 8 years ago

10.1186/s12870-020-02641-8

Interactions between genetics and environment shape Camelina seed oil composition
Cited by: 15
Author(s): Jordan R. Brock, Trey J Scott, Amy Yoonjin Lee, Sergei L. Mosyakin, Kenneth M. Olsen
Software Mentions: 6
Published: over 3 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447