Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-017-1711-z

https://doi.org/10.1186/s12859-017-1711-z

GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles

Cited by: 8
Author(s): Michael Klein, David F. Stern, Hongyu Zhao
Published: over 7 years ago

Software Mentions 7

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

cran: e1071

Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Papers that mentioned: 419

cran: GE

General Equilibrium Modeling
Papers that mentioned: 401

cran: GRAPE

Gene-Ranking Analysis of Pathway Expression
Papers that mentioned: 24

cran: randomForest

Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447

pypi: DIRAC

DIRAC is an interware, meaning a software framework for distributed computing.
Papers that mentioned: 15

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893