Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: DIRAC

https://packages.ecosyste.ms/registries/pypi.org/packages/DIRAC

DIRAC is an interware, meaning a software framework for distributed computing.
198 versions
Latest release: about 1 year ago
3 dependent packages
2,041,217 downloads last month

Papers Mentioning DIRAC 15

10.1371/journal.pone.0084227

Automatic Context-Specific Subnetwork Discovery from Large Interaction Networks
Cited by: 10
Author(s): Ashis Saha, Aik Choon Tan, Jaewoo Kang
Software Mentions: 9
Published: almost 11 years ago

GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles
Cited by: 8
Author(s): Michael Klein, David F. Stern, Hongyu Zhao
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pcbi.1009263

A multi-objective genetic algorithm to find active modules in multiplex biological networks
Cited by: 7
Author(s): Elva María Novoa-del-Toro, Efrén Mezura-Montes, Matthieu Vignes, Morgane Térézol, Frédérique Magdinier, Laurent Tichit, Anaı̈s Baudot
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1000792

Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)
Cited by: 74
Author(s): James A. Eddy, Leroy Hood, Nathan D. Price, Donald Geman
Software Mentions: 4
Published: over 14 years ago

10.1007/s10822-016-9900-9

1001 Ways to run AutoDock Vina for virtual screening
Cited by: 122
Author(s): Mohammad Mahdi Jaghoori, Boris Bleijlevens, Sílvia D. Olabarriaga
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2105-14-78

AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures
Cited by: 7
Author(s): John C. Earls, James A. Eddy, Cory C. Funk, Yun Woong Ko, Andrew T. Magis, Nathan D. Price
Software Mentions: 3
Published: almost 12 years ago

10.3389/fmolb.2021.729513

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem
Cited by: 230
Author(s): Rodrigo Vargas Honorato, Panagiotis I. Koukos, Brian Jiménez‐García, A. Tsaregorodtsev, M. Verlato, Andrea Giachetti, Antonio Rosato, Alexandre Bonvin
Software Mentions: 3
Published: over 3 years ago

10.1021/acs.jctc.1c00260

Implementation of Relativistic Coupled Cluster Theory for Massively Parallel GPU-Accelerated Computing Architectures
Cited by: 13
Author(s): Johann Valentin Pototschnig, Αναστάσιος Παπαδόπουλος, Dmitry I. Lyakh, Michal Repiský, Loïc Halbert, André Severo Pereira Gomes, Hans Jo/rgen Aa. Jensen, Lucas Visscher
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0076694

Transcriptional Analysis of Aggressiveness and Heterogeneity across Grades of Astrocytomas
Cited by: 7
Author(s): Chun-Jing Wang, Cory C. Funk, James A. Eddy, Nathan D. Price
Software Mentions: 2
Published: about 11 years ago

10.1002/biot.201100305

Molecular signatures from omics data: From chaos to consensus
Cited by: 103
Author(s): Jaeyun Sung, Yuliang Wang, Sriram Chandrasekaran, Daniela Witten, Nathan D. Price
Software Mentions: 2
Published: over 12 years ago

10.1098/rsta.2012.0094

Processing LHC data in the UK
Cited by: 1
Author(s): D. Colling, D. Britton, John Gordon, S. L. Lloyd, A. T. Doyle, P D Gronbech, John Coles, Andrew Sansum, G. N. Patrick, R. W. L. Jones, R. P. Middleton, David Kelsey, A. Cass, N. I. Geddes, P. J. Clark, L. S. Barnby
Software Mentions: 2
Published: almost 12 years ago

10.3390/ijms17081272

Gene Set−Based Integrative Analysis Revealing Two Distinct Functional Regulation Patterns in Four Common Subtypes of Epithelial Ovarian Cancer
Cited by: 13
Author(s): Chia Ming Chang, Chi Mu Chuang, Mong‐Lien Wang, Yi Yang, Jen Hua Chuang, Ming Yang, Ming Shyen Yen, Shih Hwa Chiou, Chi-Ching Chang
Software Mentions: 2
Published: over 8 years ago

10.1021/acs.jpca.0c09043

Spectroscopic/Bond Property Relationship in Group 11 Dihydrides via Relativistic Four-Component Methods
Cited by: 3
Author(s): Diego Sorbelli, Matteo De Santis, Paola Belanzoni, Leonardo Belpassi
Software Mentions: 1
Published: about 4 years ago

10.1038/srep12626

Nuclear volume effects in equilibrium stable isotope fractionations of mercury, thallium and lead
Cited by: 27
Author(s): Shicheng Yang, Yun Liu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12859-015-0737-3

Subtype prediction in pediatric acute myeloid leukemia: classification using differential network rank conservation revisited
Cited by: 2
Author(s): Askar Obulkasim, Maarten Fornerod, Michel Zwaan, Dirk Reinhardt, Marry M. van den Heuvel‐Eibrink
Software Mentions: 1
Published: over 9 years ago