cran: randomForest | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0215142

Mathematical modeling for the prediction of cerebral white matter lesions based on clinical examination data
Cited by: 7
Author(s): Yuya Shinkawa, Takashi Yoshida, Yohei Onaka, Makoto Ichinose, Kazuo Ishii
Software Mentions: 10
Published: about 5 years ago

10.1371/journal.pone.0194085

Predicting urinary tract infections in the emergency department with machine learning
Cited by: 112
Author(s): Richard A. Taylor, Christopher L. Moore, Kei‐Hoi Cheung, Cynthia Brandt
Software Mentions: 10
Published: about 6 years ago

10.1186/s12864-015-2250-5

Leveraging global gene expression patterns to predict expression of unmeasured genes
Cited by: 3
Author(s): James Rudd, René A. Zelaya, Eugene Demidenko, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Software Mentions: 10
Published: over 8 years ago

10.3390/ijerph18084052

The Impact of Temperature on the Risk of COVID-19: A Multinational Study
Cited by: 5
Author(s): Ya‐Chen Yang, Jason Lee
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pcbi.1007276

Benchmarking network propagation methods for disease gene identification
Cited by: 29
Author(s): Sergio Picart‐Armada, Steven J. Barrett, David Willé, Alexandre Perera-Lluna, Alex Gutteridge, Benoît H. Dessailly
Software Mentions: 9
Published: over 4 years ago

10.1186/s40478-019-0797-0

Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriers
Cited by: 36
Author(s): Dennis W. Dickson, Matthew Baker, Jazmyne L. Jackson, Mariely DeJesus-Hernandez, Ni Cole A. Finch, Shulan Tian, Michael G. Heckman, Cyril Pottier, Tania F. Gendron, Melissa E. Murray, Yingxue Ren, Joseph S. Reddy, Neill R. Graff‐Radford, Bradley F. Boeve, Ronald C. Petersen, David S. Knopman, Keith A. Josephs, Leonard Petrucelli, Björn Oskarsson, John W. Sheppard, Yan W. Asmann, Rosa Rademakers, Marka van Blitterswijk
Software Mentions: 9
Published: over 4 years ago

10.3390/jcm10194354

Application of an Exploratory Knowledge-Discovery Pipeline Based on Machine Learning to Multi-Scale OMICS Data to Characterise Myocardial Injury in a Cohort of Patients with Septic Shock: An Observational Study
Cited by: 3
Author(s): Bernardo Bollen Pinto, Vicent Ribas Ripoll, Paula Subías-Beltrán, Antoine Herpain, Cristina Barlassina, Eliandre de Oliveira, Roberta Pastorelli, Daniele Braga, Matteo Barcella, Laia Subirats, Julia Bauzá‐Martinez, Antonia Odena, Manuela Ferrario, Giuseppe Baselli, Federico Aletti, Karim Bendjelid
Software Mentions: 9
Published: over 2 years ago

10.1186/s13104-016-1945-2

Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative study
Cited by: 9
Author(s): Tjeerd van der Ploeg, Ewout W. Steyerberg
Software Mentions: 9
Published: about 8 years ago

10.1371/journal.pone.0071218

Novel Three-Step Pseudo-Absence Selection Technique for Improved Species Distribution Modelling
Cited by: 137
Author(s): Senait D. Senay, Susan P. Worner, Takayoshi Ikeda
Software Mentions: 9
Published: almost 11 years ago

10.1371/journal.pone.0238757

Predicting drug sensitivity of cancer cells based on DNA methylation levels
Cited by: 4
Author(s): Sofia Pontes de Miranda, Fernanda Baião, Julia L. Fleck, Stephen R. Piccolo
Software Mentions: 9
Published: over 2 years ago

10.3390/metabo10030086

Local Phenomena Shape Backyard Soil Metabolite Composition
Cited by: 9
Author(s): Tra D Nguyen, Mahbobeh Lesani, Ines Forrest, Yunpeng Lan, Danya A. Dean, Quentin M. R. Gibaut, Yanting Guo, Ekram Hossain, Marcela Olvera, Hannah Panlilio, Adwaita R. Parab, Chao‐Yi Wu, Jean A. Bernatchez, Robert H. Cichewicz, Laura-Isobel McCall
Software Mentions: 9
Published: about 4 years ago

10.1186/1471-2105-16-S6-S3

Machine-learning scoring functions for identifying native poses of ligands docked to known and novel proteins
Cited by: 42
Author(s): Hossam M. Ashtawy, Nihar R. Mahapatra
Software Mentions: 9
Published: about 9 years ago

10.1186/1471-2407-14-130

Systematic analysis of 18F-FDG PET and metabolism, proliferation and hypoxia markers for classification of head and neck tumors
Cited by: 21
Author(s): Bianca A.W. Hoeben, Maud H.W. Starmans, Ralph T.H. Leijenaar, Ludwig Dubois, Albert J. van der Kogel, J.H.A.M. Kaanders, Paul C. Boutros, Johan Bussink
Software Mentions: 9
Published: about 10 years ago

10.1186/s12940-017-0310-9

Construction of environmental risk score beyond standard linear models using machine learning methods: application to metal mixtures, oxidative stress and cardiovascular disease in NHANES
Cited by: 73
Author(s): Sung Kyun Park, Zhangchen Zhao, Bhramar Mukherjee
Software Mentions: 9
Published: over 6 years ago

10.7554/eLife.40757

Targets and genomic constraints of ectopic Dnmt3b expression
Cited by: 24
Author(s): Yingying Zhang, Jocelyn Charlton, Rahul Karnik, Isabel Beerman, Zachary D. Smith, Hongcang Gu, Patrick Boyle, Xiaoli Mi, Kendell Clement, Ramona Pop, Andreas Gnirke, Derrick J. Rossi, Alexander Meissner
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.69040

Common virulence gene expression in adult first-time infected malaria patients and severe cases
Cited by: 15
Author(s): Jan Stephan Wichers, Gerry Tonkin‐Hill, Thorsten Thye, Ralf Krumkamp, Benno Kreuels, Jan Strauss, Heidrun von Thien, Jochen Scholz, Helle Hansson, Rasmus Weisel Jensen, Louise Turner, Freia-Raphaella Lorenz, Anna Schöllhorn, Iris Bruchhaus, Egbert Tannich, Rolf Fendel, Thomas D. Otto, Thomas Lavstsen, Tim‐Wolf Gilberger, Michael Duffy, Anna Bachmann
Software Mentions: 9
Published: about 3 years ago

10.3389/fpsyt.2019.00041

A Data Science-Based Analysis Points at Distinct Patterns of Lipid Mediator Plasma Concentrations in Patients With Dementia
Cited by: 6
Author(s): Robert Gurke, Semra Etyemez, David Prvulovic, Dominique Thomas, Stefanie C. Fleck, Andreas Reif, Gerd Geißlinger, Jörn Lötsch
Software Mentions: 9
Published: over 5 years ago

10.3390/toxins12060414

Metabolic Traits of Bovine Shiga Toxin-Producing Escherichia coli (STEC) Strains with Different Colonization Properties
Cited by: 4
Author(s): Stefanie A. Barth, M. Weber, Katharina Schaufler, Christian Berens, Lutz Geue, Christian Menge
Software Mentions: 9
Published: almost 4 years ago

10.3389/fphar.2021.746910

Spermine-Related DNA Hypermethylation and Elevated Expression of Genes for Collagen Formation are Susceptible Factors for Chemotherapy-Induced Hand-Foot Syndrome in Chinese Colorectal Cancer Patients
Cited by: 3
Author(s): Mingming Li, Jiani Chen, Shaoqun Liu, Xiaomeng Sun, Huilin Xu, Qianmin Gao, Xintao Chen, Chaowen Xi, Doudou Huang, Yi Deng, Feng zhang, Shouhong Gao, Shi Qiu, Xin Tao, Jingwen Zhai, Hua Wei, Houshan Yao, Wansheng Chen
Software Mentions: 9
Published: over 2 years ago

10.1186/1471-2288-14-91

Comparing classification methods for diffuse reflectance spectra to improve tissue specific laser surgery
Cited by: 8
Author(s): Alexander Engelhardt, Rajesh Kanawade, Christian Knipfer, Matthias Schmid, Florian Stelzle, Werner Adler
Software Mentions: 9
Published: almost 10 years ago

10.1038/s41598-021-84909-z

Omics data integration identifies ELOVL7 and MMD gene regions as novel loci for adalimumab response in patients with Crohn’s disease
Cited by: 8
Author(s): Mario Gorenjak, Mateja Zupin, Gregor Jezernik, Pavel Skok, Uroš Potočnik
Software Mentions: 9
Published: about 3 years ago

10.1186/s13742-015-0065-6

An image database of Drosophila melanogaster wings for phenomic and biometric analysis
Cited by: 26
Author(s): Anne Sonnenschein, David VanderZee, William Pitchers, Sudarshan Chari, Ian Dworkin
Software Mentions: 9
Published: almost 9 years ago

10.1038/s41598-020-72018-2

Spatial structure, parameter nonlinearity, and intelligent algorithms in constructing pedotransfer functions from large-scale soil legacy data
Cited by: 6
Author(s): Poulamee Chakraborty, Bhabani S. Das, Hitesh B. Vasava, Niranjan Panigrahi, Priyabrata Santra
Software Mentions: 9
Published: over 3 years ago

10.1186/s40168-018-0535-z

High-resolution ISR amplicon sequencing reveals personalized oral microbiome
Cited by: 30
Author(s): Chiranjit Mukherjee, Clifford J. Beall, Ann L. Griffen, Eugene J. Leys
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-020-74691-9

Integration of geoscience frameworks into digital pathology analysis permits quantification of microarchitectural relationships in histological landscapes
Cited by: 4
Author(s): Timothy J. Kendall, Catherine Mary Duff, A. D. Thomson, John P. Iredale
Software Mentions: 9
Published: over 3 years ago

10.1186/s12014-017-9163-z

Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjects
Cited by: 10
Author(s): Lisa J. Croner, Roslyn Dillon, Athit Kao, Stefanie N. Kairs, Ryan W. Benz, Ib Jarle Christensen, Hans Jørgen Nielsen, John E. Blume, Bruce E. Wilcox
Software Mentions: 9
Published: almost 7 years ago

10.3389/fpls.2019.01380

The Development of Hyperspectral Distribution Maps to Predict the Content and Distribution of Nitrogen and Water in Wheat (Triticum aestivum)
Cited by: 52
Author(s): Brooke Bruning, Huajian Liu, Chris Brien, Bettina Berger, Mervyn K. Lewis, Trevor Garnett
Software Mentions: 9
Published: over 4 years ago

10.3389/fmicb.2021.713234

Metabolomic Predictors of Non-alcoholic Steatohepatitis and Advanced Fibrosis in Children
Cited by: 12
Author(s): Kattayoun Kordy, Fan Li, David J Lee, Jason M. Kinchen, Michael Jew, Maria Eduarda La Rocque, Sara Zabih, Mónica Saavedra, Cora L. Woodward, Nicole J Cunningham, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 9
Published: almost 3 years ago

10.1371/journal.pone.0247330

Prediction of femoral osteoporosis using machine-learning analysis with radiomics features and abdomen-pelvic CT: A retrospective single center preliminary study
Cited by: 18
Author(s): Hyun Lim, Hong Il Ha, Sun-Young Park, Junhee Han
Software Mentions: 9
Published: about 3 years ago

10.1186/s13040-016-0086-4

Prediction of donor splice sites using random forest with a new sequence encoding approach
Cited by: 31
Author(s): Prabina Kumar Meher, Tanmaya Kumar Sahu, Atmakuri Ramakrishna Rao
Software Mentions: 9
Published: over 8 years ago

10.7717/peerj.6339

Splitting on categorical predictors in random forests
Cited by: 26
Author(s): Marvin N. Wright, Inke R. König
Software Mentions: 9
Published: over 5 years ago

10.3389/fmicb.2018.02571

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method
Cited by: 97
Author(s): Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu, Dong‐Qing Wei
Software Mentions: 9
Published: over 5 years ago

10.3389/fmicb.2021.641643

Temporal Bacterial Community Diversity in the Nicotiana tabacum Rhizosphere Over Years of Continuous Monocropping
Cited by: 10
Author(s): Yan Ling, Wenyou Zhang, Wangjun Duan, Yizheng Zhang, Wen Zheng, Xianjun Lai
Software Mentions: 9
Published: almost 3 years ago

10.1128/mSystems.00298-20

Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles
Cited by: 72
Author(s): Lu Luan, Chao Liang, Lijun Chen, Haotian Wang, Qinsong Xu, Yuji Jiang, Bo Sun
Software Mentions: 9
Published: almost 4 years ago

10.1038/srep29002

Effects of landscape anthropization on mosquito community composition and abundance
Cited by: 153
Author(s): Martina Ferraguti, Josué Martínez‐de la Puente, David Roiz, Santiago Ruíz, Ramón C. Soriguer, Jordi Figuerola
Software Mentions: 9
Published: almost 8 years ago

10.1038/s41598-017-10753-9

Evidence for rangewide panmixia despite multiple barriers to dispersal in a marine mussel
Cited by: 20
Author(s): Carla R. Lourenço, Katy R. Nicastro, Christopher D. McQuaid, Rosa M. Chefaoui, Jorge Assis, M. Taleb, Gerardo I. Zardi
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-020-69772-8

SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
Cited by: 15
Author(s): Mingyi Wang, Wen Luo, Kristine Jones, Xiaopeng Bian, Russell D. Williams, Herbert Higson, Dongjing Wu, Belynda Hicks, Meredith Yeager, Bin Zhu
Software Mentions: 9
Published: almost 4 years ago

10.3389/fimmu.2018.02074

Epigenetic Enhancer Marks and Transcription Factor Binding Influence Vκ Gene Rearrangement in Pre-B Cells and Pro-B Cells
Cited by: 13
Author(s): Eden Kleiman, Salvatore Loguercio, Ann J. Feeney
Software Mentions: 9
Published: over 5 years ago

10.1208/s12249-020-01660-w

Data-Driven Modeling of the Bicalutamide Dissolution from Powder Systems
Cited by: 9
Author(s): Aleksander Mendyk, Adam Pacławski, Joanna Szafraniec-Szczęsny, Agata Antosik, Witold Jamróz, Marian Paluch, Renata Jachowicz
Software Mentions: 9
Published: about 4 years ago

10.3389/fneur.2020.01021

Medical Informatics Platform (MIP): A Pilot Study Across Clinical Italian Cohorts
Cited by: 10
Author(s): Alberto Redolfi, Silvia De Francesco, Fulvia Palesi, Samantha Galluzzi, Cristina Muscio, Gloria Castellazzi, Pietro Tiraboschi, Giovanni Savini, Anna Nigri, Gabriella Bottini, Maria Grazia Bruzzone, Matteo Cotta Ramusino, Stefania Ferraro, C Wheeler-Kingshott, Fabrizio Tagliavini, Giovanni B. Frisoni, Philippe Ryvlin, Jean-François Demonet, Ferath Kherif, Stefano F. Cappa, Egidio D’Angelo
Software Mentions: 9
Published: over 3 years ago

10.1186/s13059-018-1414-4

QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data
Cited by: 140
Author(s): Kevin C.H. Ha, Benjamin J. Blencowe, Quaid Morris
Software Mentions: 9
Published: about 6 years ago

10.1186/s12864-020-6703-0

Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction
Cited by: 26
Author(s): Xubo Qian, Yong‐Xin Liu, Xiaohong Ye, Wen Jie Zheng, Shaoxia Lv, Miaojun Mo, Jinjing Lin, Wen-Qin Wang, Weihan Wang, Xianning Zhang, Meiping Lu
Software Mentions: 8
Published: about 4 years ago

10.3390/jcm10010111

Evaluating the Effect of Topical Atropine Use for Myopia Control on Intraocular Pressure by Using Machine Learning
Cited by: 19
Author(s): Tzu-En Wu, Hsin‐An Chen, Mao-Jhen Jhou, Yen-Ning Chen, Ting-Jen Chang, Chi-Jie Lu
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0240824

A novel computational approach for predicting complex phenotypes in Drosophila (starvation-sensitive and sterile) by deriving their gene expression signatures from public data
Cited by: 0
Author(s): Dobril Ivanov, Gerrit Bostelmann, Benoît Lan-Leung, Julie Williams, Linda Partridge, Valentina Escott‐Price, Janet M. Thornton
Software Mentions: 8
Published: over 3 years ago

10.18632/oncotarget.16961

RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature
Cited by: 24
Author(s): Ryne C. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, Laura Palacio, David S. Gunther, R Myers, Sara J. Cooper
Software Mentions: 8
Published: about 7 years ago

10.1186/s12967-021-02981-5

N6-Methyladenosine RNA modification in cerebrospinal fluid as a novel potential diagnostic biomarker for progressive multiple sclerosis
Cited by: 14
Author(s): Fei Ye, Tianzhu Wang, Xiaoxin Wu, Jie Liang, Jiaoxing Li, Wenli Sheng
Software Mentions: 8
Published: almost 3 years ago

10.1016/j.molcel.2019.01.009

Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
Cited by: 195
Author(s): Alba Rodríguez-Meira, Gemma Buck, Sally-Ann Clark, Benjamin Povinelli, Verónica Alcolea, Eleni Louka, Simon J. McGowan, Angela Hamblin, Nikolaos Sousos, Nikolaos Barkas, Alice Giustacchini, Bethan Psaila, Sten Eirik W. Jacobsen, Supat Thongjuea, Adam J. Mead
Software Mentions: 8
Published: about 5 years ago

10.3390/jcm9030711

Deregulation of the Purine Pathway in Pre-Transplant Liver Biopsies Is Associated with Graft Function and Survival after Transplantation
Cited by: 4
Author(s): Jin Xu, Mohammad Hassan-Ally, Ana María Casas-Ferreira, Tommi Suvitaival, Yun Ma, Hector Vilca‐Melendez, Mohamed Rela, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 8
Published: about 4 years ago

10.3390/plants10081512

Floral Scent Evolution in the Genus Jaborosa (Solanaceae): Influence of Ecological and Environmental Factors
Cited by: 6
Author(s): Marcela Moré, Florencia Soteras, Ana C. Ibañez, Stefan Dötterl, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: almost 3 years ago

10.3390/e23060695

Knowledge Discovery from Medical Data and Development of an Expert System in Immunology
Cited by: 3
Author(s): Małgorzata Pac, Irina Mikutskaya, Jan J. Mulawka
Software Mentions: 8
Published: almost 3 years ago

10.15252/msb.20199002

Endogenous fluctuations of <scp>OCT</scp> 4 and <scp>SOX</scp> 2 bias pluripotent cell fate decisions
Cited by: 35
Author(s): Daniel Strebinger, Cédric Deluz, Elias T Friman, Subashika Govindan, Andrea Brigitta Alber, David M. Suter
Software Mentions: 8
Published: over 4 years ago

10.1038/s41389-019-0157-8

DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
Cited by: 119
Author(s): Feng Gao, Wei Wang, Miaomiao Tan, Lina Zhu, Yuchen Zhang, Evelyn Fessler, Louis Vermeulen, Xin Wang
Software Mentions: 8
Published: almost 5 years ago

10.3390/microorganisms9091929

Relative Importance of Deterministic and Stochastic Processes on Soil Microbial Community Assembly in Temperate Grasslands
Cited by: 17
Author(s): Nana Liu, Huifeng Hu, Wenqi Ma, Ye Deng, Qinggang Wang, Ao Luo, Jiahui Meng, Xiaojuan Feng, Zhiheng Wang
Software Mentions: 8
Published: over 2 years ago

10.3390/jcm9082530

Distinctive Tissue and Serum MicroRNA Profile of IgG4-Related Ophthalmic Disease and MALT Lymphoma
Cited by: 5
Author(s): Naoya Nezu, Yoshihiko Usui, Masaki Asakage, Hiroyuki Shimizu, Kinya Tsubota, Akitomo Narimatsu, Kazuhiko Umazume, Naoyuki Yamakawa, Shinya Ohno, Masakatsu Takanashi, Masahiko Kuroda, Hiroshi Gotô
Software Mentions: 8
Published: almost 4 years ago

10.3390/ijms22042102

Putative Circulating MicroRNAs Are Able to Identify Patients with Mitral Valve Prolapse and Severe Regurgitation
Cited by: 6
Author(s): Paola Songia, Mattia Chiesa, Valentina Alfieri, Ilaria Massaiu, Donato Moschetta, Veronika A. Myasoedova, Vincenza Valerio, Laura Fusini, Paola Gripari, Marco Zanobini, Paolo Poggio
Software Mentions: 8
Published: about 3 years ago

10.1016/j.ebiom.2021.103444

A diagnostic miRNA signature for pulmonary arterial hypertension using a consensus machine learning approach
Cited by: 24
Author(s): Niamh Errington, James Iremonger, Josephine Pickworth, Sokratis Kariotis, Christopher J. Rhodes, Alexander Rothman, Robin Condliffe, Charles Elliot, David G. Kiely, Luke Howard, John Wharton, A. A. Roger Thompson, Nicholas W. Morrell, Martin R. Wilkins, Dennis Wang, Allan Lawrie
Software Mentions: 8
Published: almost 3 years ago

10.1186/s12884-018-1971-2

Comparison of logistic regression with machine learning methods for the prediction of fetal growth abnormalities: a retrospective cohort study
Cited by: 70
Author(s): Stefan Kuhle, Bryan Maguire, Hongqun Zhang, David C. Hamilton, Alexander C. Allen, K.S. Joseph, Victoria M. Allen
Software Mentions: 8
Published: almost 6 years ago

10.1186/s40168-019-0716-4

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji
Cited by: 11
Author(s): Laura K. Boelsen, Eileen M. Dunne, Moana Mika, Stefanie Eggers, Cattram Nguyen, Felisita Tupou Ratu, Fiona M. Russell, E. Kim Mulholland, Markus Hilty, Catherine Satzke
Software Mentions: 8
Published: almost 5 years ago

10.1186/gb-2013-14-12-r137

Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas
Cited by: 76
Author(s): Marcus Renner, Thomas Wolf, Hannah Meyer, Wolfgang Hartmann, Roland Penzel, Alexis Ulrich, Burkhard Lehner, Volker Hovestadt, Esteban Czwan, Gerlinde Egerer, Thomas Schmitt, Ingo Alldinger, Eva Kristin Renker, Volker Ehemann, Roland Eils, Eva Wardelmann, Reinhard Büttner, Peter Lichter, Benedikt Brors, Peter Schirmacher, Gunhild Mechtersheimer
Software Mentions: 8
Published: over 11 years ago

10.1128/mSystems.00112-21

Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models
Cited by: 10
Author(s): Puzi Jiang, Sicheng Wu, Qibin Luo, Xing‐Ming Zhao, Weihua Chen
Software Mentions: 8
Published: almost 3 years ago

10.7717/peerj.7495

Metabolic alterations in pea leaves during arbuscular mycorrhiza development
Cited by: 21
Author(s): O. Y. Shtark, Roman Puzanskiy, G. S. Avdeeva, Andrey P. Yurkov, Galina Smolikova, Vladislav V. Yemelyanov, Marina S. Kliukova, А. Л. Шаварда, А. А. Кирпичникова, А. И. Жернаков, Alexey М. Afonin, И. А. Тихонович, В. А. Жуков, М. Ф. Шишова
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-021-98966-x

Identification of immune-related subtypes of colorectal cancer to improve antitumor immunotherapy
Cited by: 4
Author(s): Xiangkuo Zheng, Yong Gao, Chunhua Yu, Guiquan Fan, Pengwu Li, Ming Zhang, Jian Yu, Mingqing Xu
Software Mentions: 8
Published: over 2 years ago

10.3390/genes11040435

Identification of Potential Biomarkers for Anti-PD-1 Therapy in Melanoma by Weighted Correlation Network Analysis
Cited by: 14
Author(s): Xuanyi Wang, Zixuan Chai, Yinghong Li, Fei Long, Youjin Hao, Guizhi Pan, Mingwei Liu, Bo Li
Software Mentions: 8
Published: about 4 years ago

10.1007/s00125-019-4848-7

Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention study
Cited by: 117
Author(s): Thomas Bryrup, Cæcilie W. Thomsen, Timo Kern, Kristine H. Allin, Ivan Brandslund, Niklas Rye Jørgensen, Henrik Vestergaard, Torben Hansen, Oluf Pedersen, Trine Nielsen
Software Mentions: 8
Published: about 5 years ago

10.1186/s13007-021-00744-3

PredCRG: A computational method for recognition of plant circadian genes by employing support vector machine with Laplace kernel
Cited by: 4
Author(s): Prabina Kumar Meher, Ansuman Mohapatra, Subhrajit Satpathy, Anuj Sharma, Isha Saini, Sukanta Kumar Pradhan, Anil Rai
Software Mentions: 8
Published: about 3 years ago

10.3389/fonc.2020.00832

Diagnostic Value of Combinatorial Markers in Colorectal Carcinoma
Cited by: 7
Author(s): Veronika Voronova, Petr Glybochko, Andrey Svistunov, В В Фомин, Philipp Kopylov, Peter Tzarkov, А. В. Егоров, E. P. Gitel, А. А. Рагимов, Alexander Boroda, Elena Poddubskaya, Marina Sekacheva
Software Mentions: 8
Published: almost 4 years ago

10.3389/fonc.2021.561763

Predict Colon Cancer by Pairing Plasma miRNAs: Establishment of a Normalizer-Free, Cross-Platform Model
Cited by: 3
Author(s): Dashan Qin, Qingdong Guo, Rui Wei, Si Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 8
Published: about 3 years ago

10.3389/fonc.2020.00071

Machine Learning Decision Tree Models for Differentiation of Posterior Fossa Tumors Using Diffusion Histogram Analysis and Structural MRI Findings
Cited by: 24
Author(s): Seyedmehdi Payabvash, Mariam Aboian, Tarık Tıhan, Soonmee Cha
Software Mentions: 8
Published: over 4 years ago

10.1186/s12911-019-0801-4

Predicting factors for survival of breast cancer patients using machine learning techniques
Cited by: 143
Author(s): Mogana Darshini Ganggayah, Nur Aishah Mohd Taib, Yip Cheng Har, Píetro Lió, Sarinder Kaur Dhillon
Software Mentions: 8
Published: about 5 years ago

10.1155/2018/3719703

Quantitative Assessment of the Physiological Parameters Influencing QT Interval Response to Medication: Application of Computational Intelligence Tools
Cited by: 2
Author(s): Sebastian Polak, Barbara Wiśniowska, Aleksander Mendyk, Adam Pacławski, Jakub Szlęk
Software Mentions: 8
Published: over 6 years ago

10.3390/cancers13051113

MPscore: A Novel Predictive and Prognostic Scoring for Progressive Meningioma
Cited by: 12
Author(s): Feili Liu, Jin Qian, Chenkai Ma
Software Mentions: 8
Published: about 3 years ago

10.1038/s41598-021-86529-z

Impact of land cover and landfills on the breeding effect and nest occupancy of the white stork in Poland
Cited by: 12
Author(s): Joanna T. Białas, Łukasz Dylewski, Andrzej Dylik, Tomasz Janiszewski, Ireneusz Kaługa, Tomek Królak, Robert Kruszyk, Krzysztof Pawlukojć, Zuzanna Pestka, M. Polakowski, Adam Zbyryt, Marcin Tobółka
Software Mentions: 8
Published: about 3 years ago

10.1093/bioinformatics/btx738

PlanNET: homology-based predicted interactome for multiple planarian transcriptomes
Cited by: 17
Author(s): Sergio Castillo-Lara, Josep F. Abril
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0255708

Identification of key genes and immune infiltration modulated by CPAP in obstructive sleep apnea by integrated bioinformatics analysis
Cited by: 3
Author(s): Cheng Fan, Sisi Huang, Chunhua Xiang, Tianhui An, Yi Song
Software Mentions: 8
Published: over 2 years ago

10.3389/fmicb.2020.555347

Dysbiosis in the Dead: Human Postmortem Microbiome Beta-Dispersion as an Indicator of Manner and Cause of Death
Cited by: 22
Author(s): Sierra F. Kaszubinski, Jennifer L. Pechal, Katelyn Smiles, Carl J. Schmidt, Heather R. Jordan, Mariah H. Meek, M. Eric Benbow
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-020-57622-6

Mainland and island populations of Mussaenda kwangtungensis differ in their phyllosphere fungal community composition and network structure
Cited by: 16
Author(s): Xin Qian, Shengchun Li, Bian Wu, Yong-Long Wang, Niu‐Niu Ji, Hui Yao, Hongyue Cai, Miaomiao Shi, Dianxiang Zhang
Software Mentions: 8
Published: over 4 years ago

10.3389/fmolb.2021.661661

A Three-Gene Peripheral Blood Potential Diagnosis Signature for Acute Rejection in Renal Transplantation
Cited by: 2
Author(s): Yicun Wang, Di Zhang, Xiaosong Hu
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pone.0219889

Spring onion seed demand forecasting using a hybrid Holt-Winters and support vector machine model
Cited by: 11
Author(s): Yihang Zhu, Yinglei Zhao, Zhang Jing-jin, Nan Geng, Danfeng Huang
Software Mentions: 8
Published: almost 5 years ago

10.1186/s40462-021-00245-x

An evaluation of machine learning classifiers for next-generation, continuous-ethogram smart trackers
Cited by: 15
Author(s): Hui Yu, Jian Deng, Ran Nathan, Max Kröschel, Sasha Pekarsky, Guozheng Li, Marcel Klaassen
Software Mentions: 8
Published: about 3 years ago

10.1186/s12877-020-01644-2

Dysbiosis, gut barrier dysfunction and inflammation in dementia: a pilot study
Cited by: 87
Author(s): Vanessa Stadlbauer, Lara Engertsberger, Irina Komarova, Nicole Feldbacher, Bettina Leber, Gerhard Pichler, Nicole Fink, Monika Scarpatetti, Walter Schippinger, Reinhold Schmidt, Angela Horvath
Software Mentions: 8
Published: almost 4 years ago

10.1136/bmjopen-2020-040132

Prediction of perinatal death using machine learning models: a birth registry-based cohort study in northern Tanzania
Cited by: 27
Author(s): Innocent B. Mboya, Michael Johnson Mahande, Mohanad Mohammed, Joseph Obure, Henry Mwambi
Software Mentions: 8
Published: over 3 years ago

10.1038/srep30086

Random Bits Forest: a Strong Classifier/Regressor for Big Data
Cited by: 22
Author(s): Yi Wang, Li Yi, Weilin Pu, Kathryn Wen, Yin Yao Shugart, Momiao Xiong, Li Jin
Software Mentions: 8
Published: almost 8 years ago

10.18632/aging.202405

Construction and analysis of a joint diagnosis model of random forest and artificial neural network for heart failure
Cited by: 25
Author(s): Yuqing Tian, Jiefu Yang, Ming Lan, Tong Zou
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0252602

Variation isn’t that hard: Morphosyntactic choice does not predict production difficulty
Cited by: 2
Author(s): Matt Hunt Gardner, Eva Uffing, Nicholas Van Vaeck, Benedikt Szmrecsanyi
Software Mentions: 8
Published: almost 3 years ago

10.1038/srep46658

Metabolism dysregulation induces a specific lipid signature of nonalcoholic steatohepatitis in patients
Cited by: 148
Author(s): Franck Chiappini, Audrey Coilly, Hanane Kadar, Philippe Gual, Albert Tran, Christophe Desterke, Didier Samuel, Jean‐Charles Duclos‐Vallée, David Touboul, Justine Bertrand‐Michel, Alain Brunelle, Catherine Guettier, François Le Naour
Software Mentions: 8
Published: about 7 years ago

10.1186/s12864-019-6251-7

Changes of intestinal bacterial microbiota in coronary heart disease complicated with nonalcoholic fatty liver disease
Cited by: 33
Author(s): Yiwen Zhang, Jianming Xu, Xuemei Wang, Xinhua Ren, Yulan Liu
Software Mentions: 8
Published: over 4 years ago

10.1186/s12957-018-1519-y

Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods
Cited by: 23
Author(s): Chunyang Li, Xiaoxi Zeng, Haopeng Yu, Yuanxia Gu, Wei Zhang
Software Mentions: 8
Published: over 5 years ago

10.3389/fgene.2019.00853

SeqDeχ: A Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples
Cited by: 0
Author(s): Alice Chiodi, Francesco Comandatore, Davide Sassera, Giulio Petroni, Claudio Bandi, Matteo Brilli
Software Mentions: 8
Published: over 4 years ago

10.2196/15431

Ensemble Learning Models Based on Noninvasive Features for Type 2 Diabetes Screening: Model Development and Validation
Cited by: 9
Author(s): Tianzhou Yang, Li Zhang, Liwei Yi, Huawei Feng, Shimeng Li, Haoyu Chen, Jü Zhu, Zhao Jian, Yingyue Zeng, Huan Liu
Software Mentions: 8
Published: almost 4 years ago

10.1093/bib/bbz096

Evaluation of single-cell classifiers for single-cell RNA sequencing data sets
Cited by: 54
Author(s): Xinlei Zhao, Shuang Wu, Nan Fang, Xiao Sun, Jue Fan
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pone.0199648

Outcomes of early NIH-funded investigators: Experience of the National Institute of Allergy and Infectious Diseases
Cited by: 10
Author(s): Patricia A. Haggerty, Matthew J. Fenton
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-016-3317-7

A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data
Cited by: 32
Author(s): Yongli Hu, Takeshi Hase, Hui Peng Li, Shyam Prabhakar, Hiroaki Kitano, See Ket Ng, Samik Ghosh, Lionel Wee
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0188660

An analytical approach to sparse telemetry data
Cited by: 3
Author(s): Michael J. Kinney, David Kacev, Suzanne Kohin, Tomoharu Eguchi
Software Mentions: 7
Published: over 6 years ago

10.3390/molecules26102854

Detection of Paratuberculosis in Dairy Herds by Analyzing the Scent of Feces, Alveolar Gas, and Stable Air
Cited by: 1
Author(s): M. Weber, Peter Gierschner, Anne Klassen, Elisa Kasbohm, Jochen K. Schubert, Wolfram Miekisch, Petra Reinhold, Heike Köhler
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pcbi.1006826

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
Cited by: 65
Author(s): David G.P. van IJzendoorn, Károly Szuhai, Inge H. Briaire-de Bruijn, Marie Kostine, Marieke L. Kuijjer, Judith V.M.G. Bovée
Software Mentions: 7
Published: about 5 years ago

10.3390/molecules24162977

VOC Profiles of Saliva in Assessment of Halitosis and Submandibular Abscesses Using HS-SPME-GC/MS Technique
Cited by: 32
Author(s): Fernanda Monedeiro, Maciej Milanowski, Ileana-Andreea Raţiu, Hubert Zmysłowski, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 7
Published: almost 5 years ago

10.1186/s10020-019-0093-2

IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis
Cited by: 12
Author(s): Jing Liu, Qi Zhu, Jing Han, Hui Zhang, Yuan Li, Yanyun Ma, Dongyi He, Jianxin Gu, Xiaodong Zhou, John D. Reveille, Li Jin, Hejian Zou, Shifang Ren, Jiucun Wang
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2019.00579

A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
Cited by: 107
Author(s): Yi‐Hui Zhou, Paul J. Gallins
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12863-017-0576-5

Evaluation of methods and marker Systems in Genomic Selection of oil palm (Elaeis guineensis Jacq.)
Cited by: 14
Author(s): Qi Bin Kwong, Chee Keng Teh, Ai Ling Ong, Fook Tim Chew, Sean Mayes, Harikrishna Kulaveerasingam, Martti T. Tammi, Suat Hui Yeoh, David R. Appleton, Jennifer Ann Harikrishna
Software Mentions: 7
Published: over 6 years ago

10.3390/molecules26113475

Unveiling Putative Functions of Mucus Proteins and Their Tryptic Peptides in Seven Gastropod Species Using Comparative Proteomics and Machine Learning-Based Bioinformatics Predictions
Cited by: 13
Author(s): Viroj Tachapuripunya, Sittiruk Roytrakul, Pramote Chumnanpuen, Teerasak E-kobon
Software Mentions: 7
Published: almost 3 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447