Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-018-1414-4

https://doi.org/10.1186/s13059-018-1414-4

QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data

Cited by: 140
Author(s): Kevin C.H. Ha, Benjamin J. Blencowe, Quaid Morris
Published: over 6 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: xgboost
Extreme Gradient Boosting
Papers that mentioned: 207
pypi: APA
Korean twitter crawler about disasters
Papers that mentioned: 93
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
pypi: xgboost
XGBoost Python Package
Papers that mentioned: 207