Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-016-0971-3

https://doi.org/10.1186/s12859-016-0971-3

Cited by: 20
Author(s): Kévin Rue-Albrecht, Paul A. McGettigan, Belinda Hernández, Nicolas C. Nalpas, David A. Magee, Andrew Parnell, Stephen V. Gordon, David E. MacHugh
Published: about 8 years ago

Software Mentions 14

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: farms

FARMS - Factor Analysis for Robust Microarray Summarization
Papers that mentioned: 4

bioconductor: GOexpress

Visualise microarray and RNAseq data using gene ontology annotations
Papers that mentioned: 4

bioconductor: GOstats

Tools for manipulating GO and microarrays
Papers that mentioned: 368

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: GSA

Gene Set Analysis
Papers that mentioned: 285

cran: randomForest

Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447

cran: RColorBrewer

ColorBrewer Palettes
Papers that mentioned: 490

cran: stringr

Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172

cran: VennDiagram

Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626

pypi: GSA

Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285

pypi: package

package is a package to package your package
Papers that mentioned: 1,300